Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq135 134 3e-26 seq210 118 2e-21 seq387 87.8 4e-12 >seq135 Length=363025 Score = 134 bits (148), Expect = 3e-26 Identities = 170/231 (74%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || | ||| | ||||| || || || || || |||||| Sbjct 298626 ATTCCTCCACGGAGACGAAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCA 298685 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | |||||| || || || || ||||| || || |||||||| || ||||| Sbjct 298686 GAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGC 298745 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTC 104508 || || || || || ||||||||||| | || ||||| || | || || | ||| || Sbjct 298746 GGGATGCCCTCCTTGTCCTGAATCTTCGTCTTCACATTCTCAATAGTGTC-CGAGGCCTC 298804 Query 104509 TACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || |||||||| ||||| | || || ||||| |||||||| Sbjct 298805 AACCTCCAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 298855 Score = 127 bits (140), Expect = 5e-24 Identities = 158/214 (74%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | ||||| || ||||| || || ||||| || || || | ||||| Sbjct 299099 AAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTC 299158 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || || || || || || |||||||| || ||||| || || ||||| || || Sbjct 299159 TTCAAGCTGCTTACCGGCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 299218 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAG 104525 ||||||||| | || ||||| || | ||| || | ||| || ||||| || || || | Sbjct 299219 CTGAATCTTCGTCTTCACATTCTCGATGGTGTC-CGAGGACTCGACCTCGAGAGTGATGG 299277 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||| || || || || || || || |||||||| Sbjct 299278 TCTTCCCGGTGAGGGTCTTGACGAAAATCTGCAT 299311 Score = 114 bits (126), Expect = 3e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | |||||||| ||||| || || ||||| | || | || || Sbjct 297959 AAGCACCAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATC 298018 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || ||||| || || |||||||| |||||||| || || || || || || Sbjct 298019 CTCGAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGATCAGGTGGGATACCCTCCTTGTC 298078 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| | || || || || | ||| || || || ||||| || || || || Sbjct 298079 CTGAATCTTAGTCTTCACGTTCTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGT 298138 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || || || ||||| |||||||| Sbjct 298139 CTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 298171 Score = 113 bits (124), Expect = 1e-19 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || || | ||| | ||| || ||||| | |||||||| ||||| || || ||||| Sbjct 297714 ATACCACCGCGTAGACGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCG 297773 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 | || | || || || || || || || || || || |||||||| |||||||| Sbjct 297774 TTCAACGTACGCCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCAGGC 297833 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || || || ||||||||||| | || || || || | ||| || || || Sbjct 297834 GGGATACCCTCCTTGTCCTGAATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCG 297893 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || || ||||| || || || || || ||||| |||||||| Sbjct 297894 ACCTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 297943 Score = 113 bits (124), Expect = 1e-19 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| |||||||| || || || || || || | ||||| || || || |||||| Sbjct 298887 GTGGATTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTTCCA 298946 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || | | ||| || ||||| || |||||||| || ||||||||||| | || Sbjct 298947 GCGAAGATCAAACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGAATCTTAGTCTTC 299006 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | ||| || || || ||||| || || || ||||| || || || || Sbjct 299007 ACGTTCTCAATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 299066 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 299067 TTGACGAAAATCTGCAT 299083 Score = 111 bits (122), Expect = 4e-19 Identities = 153/214 (71%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | |||||||| ||||| || || ||||| | || | || || Sbjct 298415 AAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGTCCATC 298474 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || |||||||| || ||||| || || || || ||||| Sbjct 298475 CTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGTGGGATACCCTCCTTATC 298534 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| | || || || || | || || || || ||||| || ||||| || Sbjct 298535 CTGAATCTTAGTCTTCACGTTCTCAATAGTGTCCGAAGACTCGACCTCAAGGGTAATTGT 298594 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| || || || || || ||||| ||||||||| Sbjct 298595 CTTGCCTGTTAGCGTCTTGACAAAAATCTGCATT 298628 Score = 105 bits (116), Expect = 2e-17 Identities = 151/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | |||||||| ||||| || || ||||| | || | || || Sbjct 298187 AAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATC 298246 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || |||||||| || ||||| || || || || || || Sbjct 298247 CTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTGTC 298306 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| | || || || || | ||| || || || ||||| || || || || Sbjct 298307 CTGAATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGT 298366 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||| || || || || || ||||| |||||||| Sbjct 298367 CTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 298399 >seq210 Length=341256 Score = 118 bits (130), Expect = 2e-21 Identities = 146/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || ||||| ||||| || || ||||| || ||||| | | | || || || || || ||| Sbjct 96392 GTCGATTCCTTCTGGATGTTGTAGTCTGACAGAGTGCGATCATCCTCGAGCTGCTTGCCA 96451 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| || || ||||| ||||| ||||| | || Sbjct 96452 GCGAAGATGAGACGCTGCTGGTCGGGAGGAATGCCCTCTTTGTCCTGGATCTTAGTCTTC 96511 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| | | | |||| | || ||||| || ||||| |||||||| || || || Sbjct 96512 ACATTCGCGATGTTATCAGAGGCCTCGACCTCAAGAGTAATCGTCTTACCCGTGAGGGTC 96571 Query 104543 TTTACAAATATCTGCATTTT 104562 || ||||| ||||||||||| Sbjct 96572 TTCACAAAGATCTGCATTTT 96591 >seq387 Length=288413 Score = 87.8 bits (96), Expect = 4e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Minus Query 269129 GAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTGCCGCT 269188 |||||| | || || ||||| || || || || || |||||||||||||| ||| ||| Sbjct 56388 GAAAGGCTCGTGGCGTTTGCAGCCGTGGAGGGGATTTTCTTTTCGGGGTCGTTTTGCGCC 56329 Query 269189 ATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAATTGATA 269248 | |||||| ||||||| || || || ||||| || | || ||||| ||||| | ||| Sbjct 56328 GTGTTTTGGATGAAGAAGAGGGGGCTCATGCCTGGGCTCACCTTCTCCAACGAGCTTATA 56269 Query 269249 AGCAGGGACGAAGGTTTACACTGCGA 269274 |||| ||||| || || || || Sbjct 56268 TCACGGGATGAAGGGTTGCATTGTGA 56243 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151384739377608