Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq534 102 7e-17 >seq534 Length=232212 Score = 102 bits (112), Expect = 7e-17 Identities = 202/291 (69%), Gaps = 6/291 (2%) Strand=Plus/Minus Query 5500 CACGCCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTC 5559 ||| || || |||||||| || || || || || ||||| || ||||| | |||| Sbjct 211113 CACTCCAGTAGACCCGAACCCCCCAGCTCCCCTCTCCGTCTCATCCAGCTTCTCCACGAG 211054 Query 5560 TTCCACATCGGGGAACGCAGCGCG-CTCGCAG-ATCAGCTGCGCTATTCGGTCGCCCGTC 5617 || ||| || || || | ||| ||| | ||||||||| | | || |||| | Sbjct 211053 TTGCACCCCGACCGTCG-AGATCTTCTC-CAGCACCAGCTGCGCGACCCTATC-CCCGAC 210997 Query 5618 TTTA-CCTCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTA 5676 || ||| ||| || | | ||||| ||||||||||| ||||| || | || | || Sbjct 210996 GCTAACCTTGAAGTCCTCTTCTCCGAAATTGAACAGCACGACGCCGACCTCCCCCCTATA 210937 Query 5677 GTCGGCGTCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCG 5736 || ||||| | ||||| || |||||||||||| | ||| || || || ||||| || Sbjct 210936 ATCTGCGTCCACGACGCCAGCCCCCACGTCGATGCCCTTCTTCACGGCGAGCCCGGACCG 210877 Query 5737 GGGAGCCACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGT 5787 || || ||||| |||||||||||| |||| | | | |||||| |||| Sbjct 210876 CGGGGCGACGCGCCCGTAGCACCCAGCGGGGATGCGCACCTGCAGCCCCGT 210826 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430049546567312