Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq135 100 3e-16 seq210 95.1 1e-14 >seq135 Length=363025 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| || | ||||||||||| || | ||| || ||| ||| || |||||| Sbjct 297734 CACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCCTC 297793 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || ||| | ||||| | || |||||||| || || ||||| || ||||| | Sbjct 297794 GAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCAGGCGGGATACCCTCCTTGTCCTG 297853 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || | ||| ||| ||| ||||| | ||||| || | |||||||| || Sbjct 297854 AATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTT 297913 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || |||||||||||||| Sbjct 297914 GCCCGTGAGGGTCTTGACAAAGATCTGCAT 297943 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| || | |||||||||||| || | ||| || ||| ||| || |||||| Sbjct 297962 CACCAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCCTC 298021 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || || | ||||| | || |||||||| || || ||||| || ||||| | Sbjct 298022 GAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGATCAGGTGGGATACCCTCCTTGTCCTG 298081 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || | ||| ||| ||| ||||| | ||||| || | |||||||| || Sbjct 298082 AATCTTAGTCTTCACGTTCTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTT 298141 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || |||||||||||||| Sbjct 298142 GCCCGTGAGGGTCTTGACAAAGATCTGCAT 298171 Score = 100 bits (110), Expect = 3e-16 Identities = 148/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| || | ||||||||||| || | ||| || ||| ||| || |||||| Sbjct 298190 CACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCCTC 298249 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || ||| | ||||| | || ||||| || || || ||||| || ||||| | Sbjct 298250 GAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTG 298309 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || | ||| ||| ||| ||||| | ||||| |||| |||||||| || Sbjct 298310 AATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTT 298369 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || |||||||||||||| Sbjct 298370 GCCCGTGAGGGTCTTGACAAAGATCTGCAT 298399 Score = 82.4 bits (90), Expect = 7e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||| || | ||||||||||| || | ||| || ||| ||| || |||||| Sbjct 298418 CACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGTCCATCCTC 298477 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || ||| | ||||| | || ||||| || || || ||||| || || || | Sbjct 298478 GAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGTGGGATACCCTCCTTATCCTG 298537 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || | ||| ||| | | |||||| | ||||| |||| || || || || Sbjct 298538 AATCTTAGTCTTCACGTTCTCAATAGTGTCCGAAGACTCGACCTCAAGGGTAATTGTCTT 298597 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || ||||| |||||||| Sbjct 298598 GCCTGTTAGCGTCTTGACAAAAATCTGCAT 298627 >seq210 Length=341256 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||||||| | ||| | ||| |||||||| || | ||| || || || |||| | Sbjct 96374 CGCAACACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCTGACAGAGTGCGATCA 96433 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||| ||||| || || | ||||| | | ||||| || |||||||| || |||||| Sbjct 96434 TCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATGCCCTCTTTG 96493 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || | ||| || ||| | |||| | ||||| |||| || || Sbjct 96494 TCCTGGATCTTAGTCTTCACATTCGCGATGTTATCAGAGGCCTCGACCTCAAGAGTAATC 96553 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || || ||||||||||||||||| Sbjct 96554 GTCTTACCCGTGAGGGTCTTCACAAAGATCTGCAT 96588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448286011029360