Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq778 196 8e-46 seq594 154 2e-33 seq335 138 2e-28 >seq778 Length=92618 Score = 196 bits (216), Expect = 8e-46 Identities = 203/266 (76%), Gaps = 0/266 (0%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATC 16492 || ||||||||||||| | ||||| ||||| |||||||| ||||||||||| || ||| Sbjct 24823 GCCAAGCGTCATCGCAAAGTCCTTCGCGATAATATCCAAGGGATCACCAAGCCCGCCATC 24882 Query 16493 CGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATT 16552 |||||||| || |||||||| || ||||||||| |||| || | |||| || |||| Sbjct 24883 CGTCGTCTCGCCCGTCGTGGCGGTGTCAAGCGTATCTCAGGCCTCATCTACGAGGAGACC 24942 Query 16553 CGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAG 16612 || | ||| | ||| |||||||| || |||| |||| || ||| || ||| || ||| Sbjct 24943 CGCAACGTTCTCAAGGTCTTCCTCGAGTCCGTCATCCGCGACGCTGTCACCTACACAGAG 25002 Query 16613 CACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGC 16672 |||||| || ||||| ||| ||| |||||| ||||||| || | || || || ||| Sbjct 25003 CACGCTCGTCGCAAGACAGTCGTCTCGATGGATGTCGTCTACGCCCTCAAGCGCCAGGGC 25062 Query 16673 CGTAAGATTTATGGTTTTGGAAGTTA 16698 |||| | |||| || || || ||||| Sbjct 25063 CGTACGCTTTACGGCTTCGGCAGTTA 25088 >seq594 Length=586499 Score = 154 bits (170), Expect = 2e-33 Identities = 193/262 (74%), Gaps = 2/262 (1%) Strand=Plus/Minus Query 16432 CGCTAAGCGTCATCGCAGATCTCTT-CGAGATAACATCCAAGGAATCACCAAGCCAGCTA 16490 ||| ||||||||||||| | |||| || ||||||||||| || ||||| |||||||||| Sbjct 417185 CGCCAAGCGTCATCGCA-AGGTCTTGCGCGATAACATCCAGGGCATCACTAAGCCAGCTA 417127 Query 16491 TCCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGA 16550 |||||||||||||||| | ||||| ||||||||| |||| || | |||| ||||||| Sbjct 417126 TCCGTCGTCTGGCTCGCAGAGGTGGTGTCAAGCGTATCTCCGGTCTCATCTACGAAGAGA 417067 Query 16551 TTCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCG 16610 || | ||| | ||| ||||||| | |||| || | || || || || || | Sbjct 417066 CCCGCAACGTTCTCAAGGTCTTCCTGGAATCCGTCATTCGCGACTCTGTCACATACACTG 417007 Query 16611 AGCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAG 16670 |||| || |||||||| ||| || ||||| ||||||| || | || | || | Sbjct 417006 AGCATGCCCGCCGTAAGACGGTCGTGTCTATGGACGTCGTCTACGCCCTCAAGAGACAGG 416947 Query 16671 GCCGTAAGATTTATGGTTTTGG 16692 | |||| | | |||||||| || Sbjct 416946 GACGTACGCTCTATGGTTTCGG 416925 >seq335 Length=665128 Score = 138 bits (152), Expect = 2e-28 Identities = 187/261 (72%), Gaps = 0/261 (0%) Strand=Plus/Plus Query 16432 CGCTAAGCGTCATCGCAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 ||| ||||| ||||||| | | || ||||||||||| |||||||||||||| || || Sbjct 47611 CGCCAAGCGCCATCGCAAGGTTTTGCGCGATAACATCCAGGGAATCACCAAGCCCGCCAT 47670 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 ||| ||||| ||||| | ||||| ||||||||| |||| || | |||| ||||||| Sbjct 47671 CCGCCGTCTAGCTCGCAGGGGTGGTGTCAAGCGTATCTCCGGCCTCATCTACGAAGAGAC 47730 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 ||| | || | ||| |||||||| || | || || | || | || || ||||| Sbjct 47731 TCGCAACGTCCTCAAGGTCTTCCTCGAGTCTGTCATTCGCGACTCCGTCACGTACACCGA 47790 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||| || || ||||| ||| ||||||||| |||| || || | || | || || Sbjct 47791 GCATGCCCGCCGCAAGACCGTCGTGTCCATGGATGTCGTGTACGCCCTCAAGAGACAGGG 47850 Query 16672 CCGTAAGATTTATGGTTTTGG 16692 |||| | | ||||| || || Sbjct 47851 ACGTACGCTCTATGGGTTCGG 47871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074353351718