Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_006882.2 Length=45176 Score E Sequences producing significant alignments: (Bits) Value seq926 470 4e-128 seq137 470 4e-128 >seq926 Length=180086 Score = 470 bits (520), Expect = 4e-128 Identities = 698/987 (71%), Gaps = 2/987 (0%) Strand=Plus/Minus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || |||| ||| | || ||||| || ||||| || ||| | ||||||||||| ||||| Sbjct 18154 TTCTGTGCTTGGATTACTAGTACTGAAAACCGTCTATATATTGGTTGGTTTGGTGTACTA 18095 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| || ||||| | ||||| || || || | || || | || ||||| Sbjct 18094 ATGATACCAACACTACTAACAGCTACATCTGTATTCATCATTGCATTCGTTGCTGCACCT 18035 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || || || || ||||| || ||||| |||||| | || || ||| | || || || || Sbjct 18034 CCAGTTGACATCGATGGTATCCGTGAACCAGTTGCAGGTTCTTTACTTTATGGTAATAAC 17975 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 || |||||||| || | | || || || ||||| || | ||||||||||| || Sbjct 17974 ATCATTTCTGGTGCTATTATACCTAGTTCTGCAGCAATTGGTATTCACTTTTATCCTATT 17915 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | |||||||||||||| |||| || || || |||||| |||| |||| Sbjct 17914 TGGGAAGCTGCATCTTTAGATGAGTGGCTATATAATGGTGGCCCATATGAACTAATTGTT 17855 Query 19590 TTCCACTTCTTAATAGGAGTA-GCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAG 19648 | ||||| | |||| ||| | || || |||| | | |||||| || ||| | Sbjct 17854 CTTCACTTTATTTTAGGTGTATGTTGC-TATATTGGTCGTGAATGGGAATTAAGCTACCG 17796 Query 19649 ATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGC 19708 ||||| ||| | || ||||| | || || | |||||| || || ||||||| || Sbjct 17795 TTTAGGTATGCGCCCTTGGATCTCAGTTGCTTTTACAGCTCCTGTAGCAGCAGCAGCAGC 17736 Query 19709 TGTGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768 || ||||| ||||| ||| |||| ||||| || || ||||||||||||| | || || Sbjct 17735 AGTATTTCTTGTTTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGCAT 17676 Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828 ||||||||| || || |||||| | || |||||||| || || || || || |||||||| Sbjct 17675 CTCTGGTACATTCAATTTTATGCTTGTTTTCCAAGCTGAGCATAACATTCTAATGCATCC 17616 Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 |||||| | ||||| || || ||||| || || ||| | || ||||||||| || Sbjct 17615 TTTCCACCAATTAGGTGTAGCAGGTGTATTTGGGGGTTCTTTATTTAGTGCTATGCATGG 17556 Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948 | | || ||||| | || || |||||||| | | ||| ||| |||| Sbjct 17555 TTCTCTTGTAACTTCTAGTTTAATTCGTGAGACAACTGAAAACGAATCAGCTAACAATGG 17496 Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008 || ||||| || ||||| ||||| || ||||||||||| || || || || |||||||| Sbjct 17495 TTACAAGTTTGGTCAAGAAGAAGAAACTTATAATATTGTTGCAGCTCATGGTTACTTTGG 17436 Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068 | || || || ||||||||| ||| || || |||||||| |||||||||| | | Sbjct 17435 ACGTTTAATTTTCCAATATGCTAGTTTTAACAACTCTCGTTCGCTACATTTCTTCTTAGG 17376 Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128 || | || || || || || ||| |||| | ||| | | |||||||||||||| Sbjct 17375 TATGTGGCCTGTTGTAGGTATTTGGTTTACAGCAATGTCTGTTAGTACTATGGCTTTCAA 17316 Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAAC 20188 | |||||||| ||||| || || ||||| |||||| | | || |||| || Sbjct 17315 TTTAAATGGTTTCAACTTCAATCAATCAGTTGTTGATAGCCAAGGCCGTGTAATTAATAC 17256 Query 20189 ATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGC 20248 ||||| ||| | ||||| |||||||| | || | ||||| ||||| || || ||||| Sbjct 17255 TTGGGCAGATATTTTAAACAGAGCTAATTTAGGTATGGAAGTAATGCATGAACGTAATGC 17196 Query 20249 TCATAACTTCCCACTTGATTTAGCTTC 20275 ||||| || || || |||||||| || Sbjct 17195 ACATAATTTTCCTCTAGATTTAGCGTC 17169 >seq137 Length=19730 Score = 470 bits (520), Expect = 4e-128 Identities = 698/987 (71%), Gaps = 2/987 (0%) Strand=Plus/Plus Query 19290 TTTTGTGAGTGGGTCACAAGTACCGAGAACCGCCTTTATGTAGGTTGGTTTGGAGTACTT 19349 || |||| ||| | || ||||| || ||||| || ||| | ||||||||||| ||||| Sbjct 16768 TTCTGTGCTTGGATTACTAGTACTGAAAACCGTCTATATATTGGTTGGTTTGGTGTACTA 16827 Query 19350 ATGATTCCTTGCTTACTAGCTGCTACTACTTGCTTTATACTCGCCTTTATCGCAGCACCG 19409 ||||| || ||||| | ||||| || || || | || || | || ||||| Sbjct 16828 ATGATACCAACACTACTAACAGCTACATCTGTATTCATCATTGCATTCGTTGCTGCACCT 16887 Query 19410 CCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTACGGAAACAAT 19469 || || || || ||||| || ||||| |||||| | || || ||| | || || || || Sbjct 16888 CCAGTTGACATCGATGGTATCCGTGAACCAGTTGCAGGTTCTTTACTTTATGGTAATAAC 16947 Query 19470 ATTATTTCTGGAGCAGTAGTTCCAAGCTCCAATGCAATAGGACTGCACTTTTATCCGATC 19529 || |||||||| || | | || || || ||||| || | ||||||||||| || Sbjct 16948 ATCATTTCTGGTGCTATTATACCTAGTTCTGCAGCAATTGGTATTCACTTTTATCCTATT 17007 Query 19530 TGGGAAGCCGGCACTTTAGATGAGTGGTTATACAACGGCGGTCCATATCAACTTGTTGTC 19589 |||||||| | |||||||||||||| |||| || || || |||||| |||| |||| Sbjct 17008 TGGGAAGCTGCATCTTTAGATGAGTGGCTATATAATGGTGGCCCATATGAACTAATTGTT 17067 Query 19590 TTCCACTTCTTAATAGGAGTA-GCAGCATACGCTGGTAGACAGTGGGAACTATCTTACAG 19648 | ||||| | |||| ||| | || || |||| | | |||||| || ||| | Sbjct 17068 CTTCACTTTATTTTAGGTGTATGTTGC-TATATTGGTCGTGAATGGGAATTAAGCTACCG 17126 Query 19649 ATTAGGAATGAGACCATGGATATTCGTAGCATATACAGCACCACTATCAGCAGCTCTTGC 19708 ||||| ||| | || ||||| | || || | |||||| || || ||||||| || Sbjct 17127 TTTAGGTATGCGCCCTTGGATCTCAGTTGCTTTTACAGCTCCTGTAGCAGCAGCAGCAGC 17186 Query 19709 TGTGTTTCTCGTTTACCCATTTGGGCAAGGGAGTTTTAGTGATGGTATGCCTCTTGGTAT 19768 || ||||| ||||| ||| |||| ||||| || || ||||||||||||| | || || Sbjct 17187 AGTATTTCTTGTTTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGCAT 17246 Query 19769 CTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACACAATATCCTTATGCATCC 19828 ||||||||| || || |||||| | || |||||||| || || || || || |||||||| Sbjct 17247 CTCTGGTACATTCAATTTTATGCTTGTTTTCCAAGCTGAGCATAACATTCTAATGCATCC 17306 Query 19829 GTTCCACATGCTCGGTGTTGCTGGCGTATTCGGTGGATCTCTTTTCTCTGCTATGCACGG 19888 |||||| | ||||| || || ||||| || || ||| | || ||||||||| || Sbjct 17307 TTTCCACCAATTAGGTGTAGCAGGTGTATTTGGGGGTTCTTTATTTAGTGCTATGCATGG 17366 Query 19889 AAGTTTGGTTACTTCCTCGATCATCAAGGAAACAACTGAGGATGTATCGCAGAACTATGG 19948 | | || ||||| | || || |||||||| | | ||| ||| |||| Sbjct 17367 TTCTCTTGTAACTTCTAGTTTAATTCGTGAGACAACTGAAAACGAATCAGCTAACAATGG 17426 Query 19949 CTATAAGTTCGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACGGGTACTTTGG 20008 || ||||| || ||||| ||||| || ||||||||||| || || || || |||||||| Sbjct 17427 TTACAAGTTTGGTCAAGAAGAAGAAACTTATAATATTGTTGCAGCTCATGGTTACTTTGG 17486 Query 20009 GAGATTGATATTTCAATATGCTTCTTTCAATAATTCTCGTTCTTTACATTTCTTTCTTGC 20068 | || || || ||||||||| ||| || || |||||||| |||||||||| | | Sbjct 17487 ACGTTTAATTTTCCAATATGCTAGTTTTAACAACTCTCGTTCGCTACATTTCTTCTTAGG 17546 Query 20069 TACTTTCCCCGTGGTTGGCATATGGCTTACCTCCATGGGAATCTGCACTATGGCTTTCAA 20128 || | || || || || || ||| |||| | ||| | | |||||||||||||| Sbjct 17547 TATGTGGCCTGTTGTAGGTATTTGGTTTACAGCAATGTCTGTTAGTACTATGGCTTTCAA 17606 Query 20129 CCTTAATGGTTTTAACTTTAACCAGTCAGTAGTTGATGTCAACGGAAAGATAATCCCAAC 20188 | |||||||| ||||| || || ||||| |||||| | | || |||| || Sbjct 17607 TTTAAATGGTTTCAACTTCAATCAATCAGTTGTTGATAGCCAAGGCCGTGTAATTAATAC 17666 Query 20189 ATGGGCTGATGTATTAAATAGAGCTAACCTCGGATTTGAAGTTATGCACGAGCGCAATGC 20248 ||||| ||| | ||||| |||||||| | || | ||||| ||||| || || ||||| Sbjct 17667 TTGGGCAGATATTTTAAACAGAGCTAATTTAGGTATGGAAGTAATGCATGAACGTAATGC 17726 Query 20249 TCATAACTTCCCACTTGATTTAGCTTC 20275 ||||| || || || |||||||| || Sbjct 17727 ACATAATTTTCCTCTAGATTTAGCGTC 17753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144440011684056