Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_006883.2 Length=252401 Score E Sequences producing significant alignments: (Bits) Value seq926 544 1e-149 seq137 544 1e-149 seq89 118 2e-21 >seq926 Length=180086 Score = 544 bits (602), Expect = 1e-149 Identities = 724/1003 (72%), Gaps = 12/1003 (1%) Strand=Plus/Minus Query 211606 TATGTTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTT 211665 ||| |||||||||||||||| || ||||| ||| || ||| | || ||| | || Sbjct 18118 TATATTGGTTGGTTTGGTGTACTAATGATACCAACACTACTAACAGCTACATCTGTATTC 18059 Query 211666 ATCGTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCT 211725 ||| | |||||| | || |||||||| ||||| ||||| || |||||||||||||| || Sbjct 18058 ATCATTGCATTCGTTGCTGCACCTCCAGTTGACATCGATGGTATCCGTGAACCAGTTGCA 17999 Query 211726 GGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCA 211785 ||||| || | |||||||| |||||||| |||||||| || | || ||| ||| Sbjct 17998 GGTTCTTTACTTTATGGTAATAACATCATTTCTGGTGCTATTATACCTAGTTCTGCAGCA 17939 Query 211786 ATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAAT 211845 || ||| | ||||| |||||||| |||||||| ||| || | ||||||||||| || ||| Sbjct 17938 ATTGGTATTCACTTTTATCCTATTTGGGAAGCTGCATCTTTAGATGAGTGGCTATATAAT 17879 Query 211846 GGTGGTCCTTA----CCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACAT 211901 ||||| || || | | ||| | |||| |||| || | || | | || || Sbjct 17878 GGTGGCCCATATGAACTAATTGTT---CTTC-ACTTTATTTTAGGTGTATGTTGCTATAT 17823 Query 211902 GGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTA 211961 || | | |||||| | ||||||||||||||||| |||||||||| ||||||| Sbjct 17822 TGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGCCCTTGGATCTCAGTTGCTTT 17763 Query 211962 TTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTC 212021 | |||| |||||| ||||||| || ||||| |||||||| ||| | ||||| || Sbjct 17762 TACAGCTCCTGTAGCAGCAGCAGCAGCAGTATTTCTTGTTTATCCAATTGGTCAAGGAAG 17703 Query 212022 ATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCA 212081 ||||| || |||||||||||||| || || || |||||||| || ||| | || ||||| Sbjct 17702 CTTCTCTGATGGTATGCCTTTAGGCATCTCTGGTACATTCAATTTTATGCTTGTTTTCCA 17643 Query 212082 AGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGG 212141 ||| || |||||||| || ||||| || ||||| |||||| |||||| | || || Sbjct 17642 AGCTGAGCATAACATTCTAATGCATCCTTTCCACCAATTAGGTGTAGCAGGTGTATTTGG 17583 Query 212142 TGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAAC 212201 || | ||||| ||||||||| ||||||||||| || ||| | || ||||| || Sbjct 17582 GGGTTCTTTATTTAGTGCTATGCATGGTTCTCTTGTAACTTCTAGTTTAATTCGTGAGAC 17523 Query 212202 CACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAA 212261 |||| || ||| ||| ||||||||||||| || ||||||||||| || ||||| Sbjct 17522 AACTGAAAACGAATCAGCTAACAATGGTTACAAGTTTGGTCAAGAAGAAGAAACTTATAA 17463 Query 212262 CATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAA 212321 || ||||| || ||||| ||||| || | | || ||||| ||||| || ||||| Sbjct 17462 TATTGTTGCAGCTCATGGTTACTTTGGACGTTTAATTTTCCAATATGCTAGTTTTAACAA 17403 Query 212322 CAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTC 212381 | | |||| |||||| | | ||||||||| | || | ||||| || | Sbjct 17402 CTCTCGTTCGCTACATTTCTTCTTAGGTATGTGGCCTGTTGTAGGTATTTGGTTTACAGC 17343 Query 212382 TATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGT 212441 ||| | | | || ||||| ||||| ||||||| ||||||||||| ||||||||||| Sbjct 17342 AATGTCTGTTAGTACTATGGCTTTCAATTTAAATGGTTTCAACTTCAATCAATCAGTTGT 17283 Query 212442 TGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGG 212501 |||| ||| || || |||||||| ||| || | |||||||| || | || Sbjct 17282 TGATAGCCAAGGCCGTGTAATTAATACTTGGGCAGATATTTTAAACAGAGCTAATTTAGG 17223 Query 212502 TATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCATCTGCTAA 212561 ||||||||| ||||| ||| | |||||||| || || || || || ||||| |||| ||| Sbjct 17222 TATGGAAGTAATGCATGAACGTAATGCACATAATTTTCCTCTAGATTTAGCGTCTGGTAA 17163 Query 212562 CGAGACAGAAGTTGCTCTTGTTGCTCCTTCTATAGGTTAATGG 212604 | | ||| ||||| ||||| || || |||||||| Sbjct 17162 CTCATTACCAGTAGCTCTAGTTGCACCAGCT----GTTAATGG 17124 Score = 118 bits (130), Expect = 2e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 207596 AGAAGATCAATATATACTAGAAGCAGCCGAAGATGCTGGTCTAGATATGCCTTCTTCTTG 207655 ||| ||| ||||||||| || | ||| |||| || ||| | ||| | || | |||||| Sbjct 67128 AGATGATTCATATATACTTGATGTAGCTGAAGTTGAAGGTATTGATCTACCATATTCTTG 67187 Query 207656 TAGAGCAGGAGCTTGTTCTGCTTGTTTAGGAAAAGTATTAGAAGGATCAGTTAATAATGA 207715 ||| ||||| |||||||| | ||| |||||||||||| |||| |||||| | | Sbjct 67188 TAGGGCAGGTTCTTGTTCTACGTGTGCTGGAAAAGTATTACAAGGTTCAGTTGACCAATC 67247 Query 207716 AGAACAATCATTCTTAGATGATGATCAATTAGAAGAAGGATGG 207758 ||| || || || |||||||||||||| |||||| ||||||| Sbjct 67248 AGATCAGTCTTTTCTAGATGATGATCAAATAGAAGCAGGATGG 67290 >seq137 Length=19730 Score = 544 bits (602), Expect = 1e-149 Identities = 724/1003 (72%), Gaps = 12/1003 (1%) Strand=Plus/Plus Query 211606 TATGTTGGTTGGTTTGGTGTTCTTATGATCCCATGTCTTCTAGCTGCAACAACATGCTTT 211665 ||| |||||||||||||||| || ||||| ||| || ||| | || ||| | || Sbjct 16804 TATATTGGTTGGTTTGGTGTACTAATGATACCAACACTACTAACAGCTACATCTGTATTC 16863 Query 211666 ATCGTAGCATTCATCGCAGCACCTCCCGTTGATATCGACGGAATCCGTGAACCAGTAGCT 211725 ||| | |||||| | || |||||||| ||||| ||||| || |||||||||||||| || Sbjct 16864 ATCATTGCATTCGTTGCTGCACCTCCAGTTGACATCGATGGTATCCGTGAACCAGTTGCA 16923 Query 211726 GGTTCATTCATGTATGGTAACAACATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCA 211785 ||||| || | |||||||| |||||||| |||||||| || | || ||| ||| Sbjct 16924 GGTTCTTTACTTTATGGTAATAACATCATTTCTGGTGCTATTATACCTAGTTCTGCAGCA 16983 Query 211786 ATCGGTTTACACTTCTATCCTATCTGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAAT 211845 || ||| | ||||| |||||||| |||||||| ||| || | ||||||||||| || ||| Sbjct 16984 ATTGGTATTCACTTTTATCCTATTTGGGAAGCTGCATCTTTAGATGAGTGGCTATATAAT 17043 Query 211846 GGTGGTCCTTA----CCAGTTGGTAATCTTCCACTTCCTTATCGGAATCTCAGCATACAT 211901 ||||| || || | | ||| | |||| |||| || | || | | || || Sbjct 17044 GGTGGCCCATATGAACTAATTGTT---CTTC-ACTTTATTTTAGGTGTATGTTGCTATAT 17099 Query 211902 GGGAAGACAGTGGGAACTTTCATACCGTTTAGGTATGCGTCCTTGGATCTGTGTTGCTTA 211961 || | | |||||| | ||||||||||||||||| |||||||||| ||||||| Sbjct 17100 TGGTCGTGAATGGGAATTAAGCTACCGTTTAGGTATGCGCCCTTGGATCTCAGTTGCTTT 17159 Query 211962 TTCAGCACCTGTATCAGCAGCTTTCGCTGTATTCCTTGTTTACCCATTCGGTCAGGGTTC 212021 | |||| |||||| ||||||| || ||||| |||||||| ||| | ||||| || Sbjct 17160 TACAGCTCCTGTAGCAGCAGCAGCAGCAGTATTTCTTGTTTATCCAATTGGTCAAGGAAG 17219 Query 212022 ATTCTCAGACGGTATGCCTTTAGGTATATCAGGAACATTCAACTTCATGTTCGTATTCCA 212081 ||||| || |||||||||||||| || || || |||||||| || ||| | || ||||| Sbjct 17220 CTTCTCTGATGGTATGCCTTTAGGCATCTCTGGTACATTCAATTTTATGCTTGTTTTCCA 17279 Query 212082 AGCAGAACATAACATCCTTATGCACCCATTCCATATGGCAGGTGTTGCAGGTATGTTCGG 212141 ||| || |||||||| || ||||| || ||||| |||||| |||||| | || || Sbjct 17280 AGCTGAGCATAACATTCTAATGCATCCTTTCCACCAATTAGGTGTAGCAGGTGTATTTGG 17339 Query 212142 TGGAGCATTATTCTCTGCTATGCACGGTTCTCTTGTTACATCTTCACTTATCCGTGAAAC 212201 || | ||||| ||||||||| ||||||||||| || ||| | || ||||| || Sbjct 17340 GGGTTCTTTATTTAGTGCTATGCATGGTTCTCTTGTAACTTCTAGTTTAATTCGTGAGAC 17399 Query 212202 CACTGGTTTAGATTCACAGAACTATGGTTACAAGTTCGGACAAGAAGAAGAGACATATAA 212261 |||| || ||| ||| ||||||||||||| || ||||||||||| || ||||| Sbjct 17400 AACTGAAAACGAATCAGCTAACAATGGTTACAAGTTTGGTCAAGAAGAAGAAACTTATAA 17459 Query 212262 CATCGTTGCTGCACATGGATACTTCGGTAGACTTATCTTCCAGTATGCATCATTCAACAA 212321 || ||||| || ||||| ||||| || | | || ||||| ||||| || ||||| Sbjct 17460 TATTGTTGCAGCTCATGGTTACTTTGGACGTTTAATTTTCCAATATGCTAGTTTTAACAA 17519 Query 212322 CAGCAGAAGTTTACACTTCTTCCTCGCATCATGGCCTGTTATCTGTGTATGGTTAACCTC 212381 | | |||| |||||| | | ||||||||| | || | ||||| || | Sbjct 17520 CTCTCGTTCGCTACATTTCTTCTTAGGTATGTGGCCTGTTGTAGGTATTTGGTTTACAGC 17579 Query 212382 TATGGGTATCTGCACAATGGCATTCAACCTAAATGGATTCAACTTCAACCAATCAGTTGT 212441 ||| | | | || ||||| ||||| ||||||| ||||||||||| ||||||||||| Sbjct 17580 AATGTCTGTTAGTACTATGGCTTTCAATTTAAATGGTTTCAACTTCAATCAATCAGTTGT 17639 Query 212442 TGATGCATCAGGTAAGGTTGTTCCTACTTGGGGTGATGTTCTTAACAGAGCAAACCTTGG 212501 |||| ||| || || |||||||| ||| || | |||||||| || | || Sbjct 17640 TGATAGCCAAGGCCGTGTAATTAATACTTGGGCAGATATTTTAAACAGAGCTAATTTAGG 17699 Query 212502 TATGGAAGTTATGCACGAAAGAAATGCACACAACTTCCCACTTGACTTAGCATCTGCTAA 212561 ||||||||| ||||| ||| | |||||||| || || || || || ||||| |||| ||| Sbjct 17700 TATGGAAGTAATGCATGAACGTAATGCACATAATTTTCCTCTAGATTTAGCGTCTGGTAA 17759 Query 212562 CGAGACAGAAGTTGCTCTTGTTGCTCCTTCTATAGGTTAATGG 212604 | | ||| ||||| ||||| || || |||||||| Sbjct 17760 CTCATTACCAGTAGCTCTAGTTGCACCAGCT----GTTAATGG 17798 >seq89 Length=37195 Score = 118 bits (130), Expect = 2e-21 Identities = 124/163 (76%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 207596 AGAAGATCAATATATACTAGAAGCAGCCGAAGATGCTGGTCTAGATATGCCTTCTTCTTG 207655 ||| ||| ||||||||| || | ||| |||| || ||| | ||| | || | |||||| Sbjct 11858 AGATGATTCATATATACTTGATGTAGCTGAAGTTGAAGGTATTGATCTACCATATTCTTG 11917 Query 207656 TAGAGCAGGAGCTTGTTCTGCTTGTTTAGGAAAAGTATTAGAAGGATCAGTTAATAATGA 207715 ||| ||||| |||||||| | ||| |||||||||||| |||| |||||| | | Sbjct 11918 TAGGGCAGGTTCTTGTTCTACGTGTGCTGGAAAAGTATTACAAGGTTCAGTTGACCAATC 11977 Query 207716 AGAACAATCATTCTTAGATGATGATCAATTAGAAGAAGGATGG 207758 ||| || || || |||||||||||||| |||||| ||||||| Sbjct 11978 AGATCAGTCTTTTCTAGATGATGATCAAATAGAAGCAGGATGG 12020 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 807545852548560