Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq759 192 7e-44 seq898 84.2 3e-11 >seq759 Length=98512 Score = 192 bits (212), Expect = 7e-44 Identities = 636/978 (65%), Gaps = 26/978 (3%) Strand=Plus/Minus Query 62874 ATTACAAACATGTTCAAGGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCC 62933 ||||||||| |||| | ||||| ||| |||| || ||||| || ||||||| | | Sbjct 48482 ATTACAAACTTGTTGAGGGCAATAGAAGCCAAGTTGCAAACAGCAACCTCATCCGGGGCA 48423 Query 62934 GCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAAATTTTGTTGA 62993 | ||| | | ||||| ||||||||||| | | ||||| ||||| | ||||| || Sbjct 48422 GTATACTCAACAATCTCTGTGCAAAGATTGGAAGATTTGATGGTTCCGAGGTTTTGCTGG 48363 Query 62994 TTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGA 63053 || ||||| |||||| |||||||| || || ||| | ||| | |||||||||||||| Sbjct 48362 TTGCTCTTCCGGTTACAAGCATCCTTGTAGAGCATGTACGGATTTCCAGTTTCAATCTGG 48303 Query 63054 GATTCTATAATCGCTTTCCAGA--CGACTCGAGCCTTTATTATAGATTTGTAT-CTC--C 63108 | ||| | ||| || | ||||| |||| || | || || || | ||| | Sbjct 48302 GCTTCGAGAATAGCATACCAGATCTTTCTCGCGC-----TCATGGAACTGCGTGCTCGGC 48248 Query 63109 TTTCTCTTTCGTATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAATC 63168 || | ||||| | |||| ||| || || || | || | | ||| | Sbjct 48247 CGTCCTTCTCGTACTTTTCGTACAGCTCTTCAAATTCAGTGCCATAGACGTCGGCCAGAC 48188 Query 63169 CAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAA 63228 |||| | |||| |||||| | | |||||||| || ||| | | || || ||||||| Sbjct 48187 CAGGGGACTCATTCGGACAGAAAAGCGACCACTGGCCATCAGCTTCGACGCGCTTCATAA 48128 Query 63229 AGAGATCAGGAATCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCT 63287 |||| || || ||||| || || || || || || | | || ||||| || || || Sbjct 48127 AGAGGTCTGGGATCCATAG-GCCGTAGAAGAGGTCACGAGCCCTCTGTTCTTCCTTGCCA 48069 Query 63288 GTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATG 63347 |||||| |||||| || || | | ||||| | ||||| || ||||| || || Sbjct 48068 TGATTCTTGCGAAGATCAAGAAAGTCGAGGATATCTGCGTGCCAAGGCTCCAAATAGATA 48009 Query 63348 GCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAA 63407 || | | || ||| || || || || || | || ||||| |||| ||| | Sbjct 48008 GCAAATGCACCCTTCCGCTTCCCGCCACCTTGGTCCACATACCTAGCTGTGTCATTGAAG 47949 Query 63408 ACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATATAGCTTCCA 63467 || | | ||| || | ||| ||||| || |||| |||||||| ||| || | | Sbjct 47948 ACACGAAGCATAGGCACAATTCCGTTCGACGTACCGTTGGTACCACGGATGTA----CGA 47893 Query 63468 CT---GGCA-CGAATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAA 63523 || ||| || || || || || | || || || ||||| || || || | Sbjct 47892 CTTTGTGCATCGGATGTTGTGGATAGACAATCCAATGCCGCCTGCGGCCTTGGAAATGAT 47833 Query 63524 TGCGCATCGTTTTAACGTGTCATAGATACCCTCTATGCTATCATCGATCATGTTAAGTAG 63583 ||||| || || | |||||||| || || || ||| || || |||| | || || Sbjct 47832 AGCGCAGCGCTTGAGAGTGTCATAAATGCCTTCAATGGAGTCCTCAGTCATAGTGAGAAG 47773 Query 63584 AAAACAGCTAGACATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTG 63643 || || || | ||| | || | || || ||||| |||| || || || || || Sbjct 47772 GAAGCAAGAGGATAGCTGGGGGCGGCAGGTGCCTGCATTGAATAGCGTTGGCGAGGCATG 47713 Query 63644 CGTAAACCATTTTTCAGAAAGTAGATTGTACGT-CTCA--ATAGCTGAGTCTATATCCCA 63700 || || || | || || || || || | || || ||| || ||||| | Sbjct 47712 GGTGAAGAGCTTGTTGGACAGGGCATCATATGTGCCCAGGATGGCT---TCCATATCGCC 47656 Query 63701 TTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTT 63760 | ||||| || ||||| |||||||| | ||| ||||| || || || || ||||| Sbjct 47655 GAGGTGAATGCCGACTGCCACACGCATGAGCATATGCTGGGGCCTCTCCACAATCTTTCC 47596 Query 63761 GTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAA 63820 ||| || | || || || |||||||| ||||| ||||| |||| || ||||| Sbjct 47595 GTTGATGCGGAGCAGATACGAGCGCTCCAAAGTCTTAAATCCAAAGTAGTCATACGAAAA 47536 Query 63821 GTCTCGTTCGTAAATAAT 63838 || | ||||| ||||| Sbjct 47535 ATCCCTGTCGTAGATAAT 47518 >seq898 Length=425369 Score = 84.2 bits (92), Expect = 3e-11 Identities = 147/209 (70%), Gaps = 4/209 (2%) Strand=Plus/Plus Query 33300 CAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGT 33359 || ||| ||| ||||| |||| || ||||| | | || |||||||| || || || Sbjct 413338 CAGACAGGCGTGGTCGCAATGCAACCCTTCGTCACGAGAGATGAGTTCGTTAGAGAAGGT 413397 Query 33360 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAA 33419 ||| || ||||| | ||||||||| || || | || |||| || || || || || Sbjct 413398 GAGGCCCGGCATCAAGCCACGCTTCTTGAGGTAGAAAATGGCGCAAAAAGAGCCCGAGAA 413457 Query 33420 GAAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCATG 33479 ||| || || || || || |||||||| | |||| |||| | ||| || |||| | | Sbjct 413458 GAAAATGCCCTCCACGGCGGCAAAGGCCACGAGTCGCTCTGCG-AACGAGCCCTGTGAGG 413516 Query 33480 TA-TCCA-CTTTTGAGCCCAATCGGCCTT 33506 | |||| | || |||||||||||||| Sbjct 413517 AAATCCAGCGAATG-GCCCAATCGGCCTT 413544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622939989386160