Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_007151.1 Length=149622 Score E Sequences producing significant alignments: (Bits) Value seq135 89.7 5e-13 >seq135 Length=363025 Score = 89.7 bits (98), Expect = 5e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | || || || | |||||| | || | || || Sbjct 297943 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTGGAGGTCGAGTCTTCG 297884 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || |||||| ||||| || || || || || ||||| Sbjct 297883 GACACCATCGAGAACGTTAAGACTAAGATTCAGGACAAGGAGGGTATCCCGCCTGATCAG 297824 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | || |||||| || ||||| |||| | | | | |||||| ||| Sbjct 297823 CAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACAAC 297764 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || |||||||| |||||||||| || Sbjct 297763 ATCCAGAAGGAATCTACCCTCCATCTGGTGCT 297732 Score = 89.7 bits (98), Expect = 5e-13 Identities = 120/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || |||||| ||||| ||||| || || || || || Sbjct 299251 GACACCATCGAGAATGTGAAGACGAAGATTCAGGACAAGGAAGGCATCCCCCCTGACCAG 299192 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || ||||| | || ||| || || || ||||| | | | | || |||||| ||| Sbjct 299191 CAGAGGCTCATCTTCGCCGGTAAGCAGCTTGAAGACGGACGCACCCTCTCCGACTACAAC 299132 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCTGAGACTTAGAGGAGG 26995 || || || || |||||| ||||||| ||||| | ||| | ||||| Sbjct 299131 ATCCAGAAGGAGTCTACTCTCCATCTCGTCCTTCGTCTTCGTGGAGG 299085 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | || || || | |||||| | || | || || Sbjct 298171 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTGGAGGTCGAGTCTTCG 298112 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || |||||| ||||| || || || || || ||||| Sbjct 298111 GACACCATCGAGAACGTGAAGACTAAGATTCAGGACAAGGAGGGTATCCCACCTGATCAG 298052 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | || || || || ||||| |||| | | | | |||||| ||| Sbjct 298051 CAGAGGCTTATCTTCGCTGGTAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACAAC 297992 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || ||||||||| |||||||||| || Sbjct 297991 ATCCAGAAGGAATCTACTCTCCATCTGGTGCT 297960 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26769 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATCACCATCGAATTAGAATCAAAC 26828 ||||| | ||||| || || | || || || | |||||| | || | || || Sbjct 298399 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCTTCG 298340 Query 26829 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGGATACCTCCCGATCAA 26888 |||||||||||| | || || |||||| ||||| || || || || || || || Sbjct 298339 GACACCATCGAGAACGTTAAGACTAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAG 298280 Query 26889 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAACGTCAGCGACTATAAC 26948 || || || || | || |||||| || ||||| |||| | | | | |||||| ||| Sbjct 298279 CAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACAAC 298220 Query 26949 ATTCAAAAAGAATCTACTATCCATCTGGTCCT 26980 || || || |||||||| |||||||||| || Sbjct 298219 ATCCAGAAGGAATCTACCCTCCATCTGGTGCT 298188 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 478656859482720