Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq759 324 4e-83 seq513 125 2e-23 >seq759 Length=98512 Score = 324 bits (358), Expect = 4e-83 Identities = 1178/1823 (65%), Gaps = 73/1823 (4%) Strand=Plus/Plus Query 363381 GTATGA-TATTTTCGGATATAAGACGATGGAGAAATCCTACCTATCTCGTATCAATGGTG 363439 |||||| || ||| |||| |||||| ||||| || || || || ||||| || Sbjct 47541 GTATGACTACTTT-GGATTTAAGACTTTGGAGCGCTCGTATCTGCTCCGCATCAACGGAA 47599 Query 363440 ATATTGTTGAACGCCCGCAGCATATGTTAATGCGTGTTGCTATTGGTATCCATTGCCCGG 363499 | ||||| || | || ||||||||| | |||||||| || | || || || | | Sbjct 47600 AGATTGTGGAGAGGCCCCAGCATATGCTCATGCGTGTGGCAGTCGGCATTCACCTCGGCG 47659 Query 363500 ATGTTGATGCCGCGATTGAAACATATAAG---CT-TCTAAGT-GCTCGTGTATTCACGCA 363554 || | || ||| | | |||||| | || || || |||| ||||| || Sbjct 47660 ATATGGAAGCCATCCTGGGCACATATGATGCCCTGTCCAACAAGCTC-----TTCACCCA 47714 Query 363555 CGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCTTGCTTTCT 363614 ||| ||||||| | | |||||| || || | || ||| | || |||||||| || Sbjct 47715 TGCCTCGCCAACGCTATTCAATGCAGGCACCTGCCGCCCCCAGCTATCCTCTTGCTTCCT 47774 Query 363615 TCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAATTGTGCTCT 363674 ||| | |||| || || ||||| || || || | |||||| || ||| || ||| | Sbjct 47775 TCTCACTATGACTGAGGACTCCATTGAAGGCATTTATGACACTCTCAAGCGCTGCGCTAT 47834 Query 363675 TATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCG-TGCACAGAACA 363733 ||||||||| |||||||| ||||| | || |||||||| | || |||||| | Sbjct 47835 CATTTCCAAGGCCGCAGGCGGCATTGGATTGTCTATCCACAACATCCGATGCACAAAGTC 47894 Query 363734 GTTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATGCTTCGTGTGTTT 363792 || |||| || || || || ||| ||||| || | || || ||||||||||| || Sbjct 47895 GT-ACATCCGTGGTACCAACGG-TACGTCGAACGGAATTGTGCCTATGCTTCGTGTCTTC 47952 Query 363793 GACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTTGCTATG 363852 | | || || ||||| || ||||| ||||| || ||||| || || || |||||||| Sbjct 47953 AATGACACAGCTAGGTATGTGGACCAAGGTGGCGGGAAGCGGAAGGGTGCATTTGCTATC 48012 Query 363853 TATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAACACGGGA 363912 ||| | |||||| || || ||||| | || |||||||| || || || || || Sbjct 48013 TATTTGGAGCCTTGGCACGCAGATATCCTCGACTTTCTTGATCTTCGCAAGAATCATGGC 48072 Query 363913 AAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCATTTTATG 363972 || || ||| | | || ||||| || ||||| | || ||| | | |||| |||||| Sbjct 48073 AAGGAAGAACAGAGGGCTCGTGACCTCTTCTACGGCCTATGGATCCCAGACCTCTTTATG 48132 Query 363973 AAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCAGGTCTT 364032 |||||||| || || | | | ||||| || || || || | || | || ||||| Sbjct 48133 AAGCGCGTCGAAGCTGATGGCCAGTGGTCGCTTTTCTGTCCGAATGAGTCCCCTGGTCTG 48192 Query 364033 TCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAGGGAAAG 364092 |||| || | || || | || | || ||||||||||| || ||| || Sbjct 48193 GCCGACGTCTATGGCACTGAATTTGAAGAGCTGTACGAAAAGTACGAGAAGGACGGCCGA 48252 Query 364093 GCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAGATTGAG 364152 || || | | || ||| ||| | |||| ||| || | || | |||||||| Sbjct 48253 GCACGCAGTTCCATGAGCGCGAGAAAGATCTGGTATGCTATTCTCGAAGCCCAGATTGAA 48312 Query 364153 ACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAGCAGCAC 364212 || |||| || || ||| | ||||| ||| | || ||||| ||| ||||||||| || Sbjct 48313 ACTGGAAATCCGTACATGCTCTACAAGGATGCTTGTAACCGGAAGAGCAACCAGCAAAAC 48372 Query 364213 CTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCTCCCGAC 364272 || || || || | ||| || || || |||||| |||| || || || || || Sbjct 48373 CTCGGAACCATCAAATCTTCCAATCTTTGCACAGAGATTGTTGAGTATACTGCCCCGGAT 48432 Query 364273 GAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAA---------AA 364323 ||| ||| || || ||| | || || || || || |||||||| || Sbjct 48433 GAGGTTGCTGTTTGCAACTTGGCTTCTATTGCCCTCAACAAGTTTGTAATTGTTCCGGAA 48492 Query 364324 GATGGT---ACT------TTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACT 364374 |||||| ||| | ||| ||| | ||| || || | | | | Sbjct 48493 GATGGTTCCACTCCGTCATATGATCACGAAGCCCTTCGCCGTGTGACGAAGATGGTTGCG 48552 Query 364375 TGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCT 364434 ||||||| |||| || |||||| || | ||||| || | ||||| || ||| Sbjct 48553 CGCAATCTTAACAAAGTAATCGACGTCAACTTCTATCCTATCCAGGAAGCTAAGAATTCC 48612 Query 364435 AATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGAC---GTTTTTATG 364491 || ||||| || ||||| |||||| | || | ||||| || || ||| || || | Sbjct 48613 AACATGCGCCACCGCCCAATTGGTATCGGAATTCAGGGGCTTGCAGACACATTTATTCTC 48672 Query 364492 ATGCTCAAGATGGCATTTGATTCGCCTGA---CGCTCGTGTTCTAAATAAGGAGATCTTT 364548 |||| | ||| | ||||| | ||| ||||||| | |||||||| || || Sbjct 48673 ATGCGC---ATGCCGTTTGA---GAGTGAGGGAGCTCGTGAGTTGAATAAGGATATTTTC 48726 Query 364549 GAAACAATGTATTT---TGCCGCAATGACTGCTTCGTGTGATTTGGCAAAAACCAAGGGA 364605 ||||| | || || || | | ||| | ||||| || | | |||| Sbjct 48727 GAAACCCTCTACTTCAGCGCTGTAGAGACCAGT---TGTGAACTGTCTTCAGAGCAGGGT 48783 Query 364606 AAGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGG 364665 ||| || || || ||||| | || |||| | ||||||||||| || ||| Sbjct 48784 CCTTACGAGACGTACATTGGTTCCCCGATGTCAAAGGGTCAGTTCCAGTTTGACCTTTGG 48843 Query 364666 AATGTCACGC---CATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAG 364722 || | || | |||| ||||||| |||||||| || || || ||| ||| Sbjct 48844 GGCGTGAAGCCCACTTCTGGCCGATGGGACTGGGATGGCCTTCGGGAGAAGGTTCTAAAG 48903 Query 364723 CATGGTACTCGCAACTC---CCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAG 364779 |||| ||||| || |||||| || || ||||| || ||||| || | ||| Sbjct 48904 AGTGGTGTCCGCAATTCACTGCTCGTT---GCTCCAATGCCTACCGCTTCAACATCGCAG 48960 Query 364780 ATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTT 364839 || ||||| ||||| ||||||||||| || | ||| ||||| || |||| |||| Sbjct 48961 ATTCTCGGTAACAATGAGTGCTTCGAGCCTTACACATCTAATCTGTACACACGAAGGGTG 49020 Query 364840 CTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGCGGG 364899 | || || || || | || || | |||| || ||||||||| | | ||| Sbjct 49021 TTGTCTGGTGAGTTCTGCATTGTGAACACTCACCTGGTAAAGGATCTTCAAAAGCTTGGG 49080 Query 364900 CTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAACATT 364959 ||||||| | | |||||||||| || | || || ||||||||||| || ||||| Sbjct 49081 CTGTGGGATTCTACCATGAAGAACCGCATAGTTGCAGCGAATGGTTCTGTTCAAAACATC 49140 Query 364960 CCAGGATTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCC---ATG 365016 || | | |||| | |||| | | | ||||| || || |||||||| | | | Sbjct 49141 CCCGAAATTCCTGCAGATATCCGCGCCCTCTACAAGACTGTCTGGGAAATCAGCCAGAAG 49200 Query 365017 CGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTT 365076 || | || ||||| | || || || || ||||| | ||| |||| ||| | Sbjct 49201 CGTATTC---TTGATCTCGCCGCTGACCGGGGTGCCTACATCGATCAGTCGCAGAGCATG 49257 Query 365077 AACGTATTCATGACTCAGCC---AACCTCCGCCAAGCTTACATCCATGCATTTCTACGGG 365133 ||| ||||| ||||| ||| | | ||||| | |||||||||||||| || Sbjct 49258 AAC--ATTCACATGGCAGCCCCGAACAT-TGGAAAGCTCAGCTCCATGCATTTCTATGGC 49314 Query 365134 TGGAAATCCGGTCTTAAGACAGG 365156 ||||| | || || |||||||| Sbjct 49315 TGGAAGGCAGGACTGAAGACAGG 49337 >seq513 Length=248591 Score = 125 bits (138), Expect = 2e-23 Identities = 300/449 (67%), Gaps = 6/449 (1%) Strand=Plus/Plus Query 111372 TGGTTTATTCGCGGAAGTACAAATGCAAATGAACTTGCAGCAAAAAA--TGTAAAAATTT 111429 |||||||| | ||||| || || |||| | || || |||||| ||| | || | Sbjct 24950 TGGTTTATCCAGGGAAGCACCGATTCAAACAAGCTCGC--CAAAAAGGGTGTGCATATAT 25007 Query 111430 GGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTCGACAACGAAGAAG 111489 |||| || || || || | || ||||| ||| | || || || | || | | Sbjct 25008 GGGACGGGAACGGGTCGAGAGAGTTTCTGGATACGCGCGGGTTTCCGGAGAGGGAGGTGG 25067 Query 111490 GTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAGACTACAAAACCA 111549 | || || || ||||| || || ||||||||||| |||||||| || || |||| | | Sbjct 25068 GCGACCTGGGTCCAGTGTATGGGTTTCAATGGCGGCACTTTGGGGCGGAATACACAGATA 25127 Query 111550 TGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAATGTCATTGATCAAATTA 111609 |||||| |||| | |||| | ||||| | || | || || ||| | | | Sbjct 25128 TGCACGCGGATTATGCAGGAAAGGGGAGAGATCAGCTGAAGGAGGTGATCGATACAGTGA 25187 Query 111610 AGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAACCCAAATGCATTGGAAA 111669 |||||||||| | | ||| || || | || ||| |||||||| || || Sbjct 25188 AGAACAACCCGAATGATCGGCGGATCCTCCTGTCTGCGTGGAACCCCGTGGCGACCGACC 25247 Query 111670 AAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGTACACGACGGGATGCTTT 111729 | ||||| || |||||||| ||||| || ||||| || || | || ||||| Sbjct 25248 AGATGGCGCTACCACCATGCCATCTGCTGGCGCAGTTCTACGTTGCGAATGGCGAGCTTT 25307 Query 111730 CATGCCAAATGTATCAGCG-ATCTGCTGATATTGGTCTTGGTGTTCCGTTTAATATTGCA 111788 ||||||| ||||| ||||| | ||| ||||| || || || || ||||| || ||||| Sbjct 25308 CATGCCAGATGTACCAGCGTAGTTGC-GATATGGGCCTCGGCGTGCCGTTCAACATTGCG 25366 Query 111789 AGTTACGCACTACTTACTTGCTTAATCGC 111817 || ||||| || || || ||||| || || Sbjct 25367 AGCTACGCGCTGCTGACGTGCTTGATTGC 25395 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303338136524132