Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq135 156 4e-33 seq759 132 5e-26 seq210 116 3e-21 >seq135 Length=363025 Score = 156 bits (172), Expect = 4e-33 Identities = 173/231 (75%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||||||||| || || | || || ||||| ||||||||||||||| Sbjct 298857 CCACCACGAAGACGCAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCGGAA 298916 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| |||||| |||||||| || ||| |||| |||||||||||||| || ||| Sbjct 298917 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 298976 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| || || ||| | | ||| | || || | ||||||| Sbjct 298977 ATTCCTTCCTTGTCCTGAATCTTAGTCTTCACGTTCTCAATGGTGTCCGAAGACTCGACC 299036 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGACT 131238 || | ||| | ||| || ||||| || || || ||||||||||||||| || Sbjct 299037 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGCCT 299087 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| || || | ||| || || | ||| | || |||||||| || |||||||| ||| Sbjct 299084 GCCTCCACGAAGACGAAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGA 299143 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 | |||||| ||| || |||||||| || ||| |||| | | ||||||||| || || Sbjct 299144 GAGGGTGCGTCCGTCTTCAAGCTGCTTACCGGCGAAGATGAGCCTCTGCTGGTCAGGGGG 299203 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| ||||| ||||| || ||| ||| | | ||| | || || | |||||||| Sbjct 299204 GATGCCTTCCTTGTCCTGAATCTTCGTCTTCACATTCTCGATGGTGTCCGAGGACTCGAC 299263 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||| || | ||| || ||||| || || || |||||||||||||||| Sbjct 299264 CTCGAGAGTGATGGTCTTCCCGGTGAGGGTCTTGACGAAAATCTGCATGA 299313 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||| ||||| | ||| | ||| || ||||| || |||||||| ||| || Sbjct 297717 CCACCGCGTAGACGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTC 297776 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || ||| ||||| ||||||||||| ||| |||| | | |||||| || || ||| Sbjct 297777 AACGTACGCCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCAGGCGGG 297836 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||| | | ||| | || || | ||||||| Sbjct 297837 ATACCCTCCTTGTCCTGAATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGACC 297896 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || || |||||||| Sbjct 297897 TCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 297943 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | || ||||| | ||| | ||| || ||||| || |||||||| ||| || Sbjct 298173 CCACCGCGAAGGCGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTC 298232 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || ||| ||||| ||||||||||| ||| |||| | | ||||||||| || ||| Sbjct 298233 AACGTACGCCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGCGGG 298292 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || || ||| | | ||| | || || | ||||||| Sbjct 298293 ATACCCTCCTTGTCCTGAATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGACC 298352 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | ||| || || || || || || || || |||||||| Sbjct 298353 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 298399 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || ||||| | || ||||| | ||| | ||| || ||||| || |||||||| ||| || Sbjct 298401 CCGCCGCGAAGGCGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTC 298460 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || ||||| ||||||||||| ||| |||| | | ||||||||| || ||| Sbjct 298461 AACGTACGTCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGTGGG 298520 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || || || ||| | | ||| | ||| || | ||||||| Sbjct 298521 ATACCCTCCTTATCCTGAATCTTAGTCTTCACGTTCTCAATAGTGTCCGAAGACTCGACC 298580 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||||| || || || ||||| || || || ||||||||||| Sbjct 298581 TCAAGGGTAATTGTCTTGCCTGTTAGCGTCTTGACAAAAATCTGCAT 298627 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 || || || | ||| || || ||||| | || ||||||||||| |||||||| || Sbjct 298629 CCTCCACGGAGACGAAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAG 298688 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| ||||||||||| ||| |||| | | ||||||||| || ||| Sbjct 298689 AGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGCGGG 298748 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || ||||| || ||| ||| | | ||| | ||| || | || ||| | Sbjct 298749 ATGCCCTCCTTGTCCTGAATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGCCTCAACC 298808 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | ||| | || || || || | || || || ||||||||||| Sbjct 298809 TCCAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 298855 >seq759 Length=98512 Score = 132 bits (146), Expect = 5e-26 Identities = 435/670 (65%), Gaps = 22/670 (3%) Strand=Plus/Minus Query 145334 AGCTCGCAACTCGCCTCCAGAGCGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGC 145393 || || ||||| | ||| | ||||| ||| || | || ||| ||| | | | || | | Sbjct 48767 AGTTCACAACTGGTCTCTACAGCGCTGAAGTAGAGGGTTTCGAAAATATCCTTATTCAAC 48708 Query 145394 AGCATCGCTTCATCGCTCTCGTACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCC 145453 ||| | || ||||| |||||||||||| || | ||| | || || |||||| Sbjct 48707 TCACGAGCTCCCTCACTCTCAAACGGCATGCGCATGAGAATAAATGTGTCTGCAAGCCCC 48648 Query 145454 TGTATTCCCACGCCGATGGGCCGATGTTTCATGTTGCTCATCCTCGCCGACTCGATAGGA 145513 || ||||| | || || || || || ||||||| || | || || ||||||| Sbjct 48647 TGAATTCCGATACCAATTGGGCGGTGGCGCATGTTGGAATTCTTAGCTTCCTGGATAGGA 48588 Query 145514 TATCGATTACGGTCGATAATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGC 145573 || || |||||| | ||| || | || ||| | || | ||| || | | || Sbjct 48587 TAGAAGTTGACGTCGATTACTTTGTTAAGATTGCGCGCAACCATCTTCGTCACACGGCGA 48528 Query 145574 AACTTTTCAAAGTCAAA---CCGAG------CCTCGTC---AACGACCACACAGCTATTG 145621 | ||| ||| | | ||| | || || ||| | ||| | | ||| Sbjct 48527 AGGGCTTCGTGATCATATGACGGAGTGGAACCATCTTCCGGAACAATTACAAACTTGTTG 48468 Query 145622 ACGGCGATCGACGCCAAATTACAAACTGCCGTCTCCTCGGCGTCGCTGTATTGTACGATC 145681 | ||| || || ||||| || ||||| || ||| || | | | | || | || ||| Sbjct 48467 AGGGCAATAGAAGCCAAGTTGCAAACAGCAACCTCATCCGGGGCAGTATACTCAACAATC 48408 Query 145682 TCGGCGCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTG 145741 || | ||| | |||| | ||||||||||||| || |||||||| || || |||| ||| Sbjct 48407 TCTGTGCAAAGATTGGAAGATTTGATGGTTCCGAGGTTTTGCTGGTTGCTCTTCCGGTTA 48348 Query 145742 CACGCGTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCACGATAAAA 145801 || || |||||||||||||||||||| ||||| || | ||| | | ||| || | Sbjct 48347 CAAGCATCCTTGTAGAGCATGTACGGATTTCCAGTTTCAATCTGGG---CTTCGAGAATA 48291 Query 145802 CGGTGCAAG-TCCTGCGCACGCACCTG---CTGC-TGGTAGCGGCCCTCTTCTTCGTATT 145856 | | || || | | | ||| | || |||| || | ||||| || | ||||| | Sbjct 48290 GCATACCAGATCTTTCTCGCGCTCATGGAACTGCGTGCT--CGGCCGTCCTTCTCGTACT 48233 Query 145857 TCCTGTAGAGCTCCTCAAACGCGGAACCGTAGCAATCGGACAGGCCGGGACACTTGTTGG 145916 | ||| ||||| ||||| | | || ||| |||| ||| || || ||| || | Sbjct 48232 TTTCGTACAGCTCTTCAAATTCAGTGCCATAGACGTCGGCCAGACCAGGGGACTCATTCG 48173 Query 145917 GACACATCAGCGACCATACGCCGTTGGCGTTGACGCGCTCCATAAACAAATCTGGCACCC 145976 |||| | |||||||| ||| | || | |||||||| |||||| | ||||| | || Sbjct 48172 GACAGAAAAGCGACCACTGGCCATCAGCTTCGACGCGCTTCATAAAGAGGTCTGGGATCC 48113 Query 145977 ACAGCGCGTA 145986 | || |||| Sbjct 48112 ATAGGCCGTA 48103 >seq210 Length=341256 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 |||||||| | ||||| ||| | || | ||||| ||||| || |||||||| || | Sbjct 96362 CCACCGCGAAGACGCAACACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCTGAC 96421 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| ||||| ||||||||||| ||| |||| | |||||||||||| ||||| Sbjct 96422 AGAGTGCGATCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGA 96481 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || |||||||| ||| || ||| | | | | | |||| | || ||||| Sbjct 96482 ATGCCCTCTTTGTCCTGGATCTTAGTCTTCACATTCGCGATGTTATCAGAGGCCTCGACC 96541 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | |||| || ||||| || || || || || || |||||||| Sbjct 96542 TCAAGAGTAATCGTCTTACCCGTGAGGGTCTTCACAAAGATCTGCAT 96588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472007336451840