Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq135 113 4e-20 >seq135 Length=363025 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 ||||| || || | || |||| ||| || || ||||||||||| ||||||||||| | Sbjct 298629 CCTCCACGGAGACGAAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAG 298688 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | || ||||||| | || ||||| || | ||||||| ||| ||||| || Sbjct 298689 AGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGCGGG 298748 Query 16829 ACGCCCTCTTTGTCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTT 16888 | |||||| ||||| ||| | | |||||| | | | |||||| || ||| Sbjct 298749 ATGCCCTCCTTGTCCTGAATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGCCTCAACC 298808 Query 16889 TCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 |||| |||||| || ||||| |||| || ||||||||||||||||| Sbjct 298809 TCCAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 298855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405083428328740