Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq271 140 2e-28 seq758 116 2e-21 seq449 98.7 7e-16 seq135 93.3 3e-14 >seq271 Length=8214 Score = 140 bits (154), Expect = 2e-28 Identities = 88/95 (93%), Gaps = 5/95 (5%) Strand=Plus/Plus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 |||||||||||||||||||||||||||||||||||||||||||| || |||||||| Sbjct 1138 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGT 1197 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 1198 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 1232 Score = 113 bits (124), Expect = 3e-20 Identities = 71/77 (92%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| Sbjct 3709 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGACTCGC 3768 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||||| Sbjct 3769 CAACCTATTTAGCCTTA 3785 >seq758 Length=101539 Score = 116 bits (128), Expect = 2e-21 Identities = 83/94 (88%), Gaps = 6/94 (6%) Strand=Plus/Plus Query 25903 AGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGGG-----GTAATCTCGTT 25957 |||||||||||| |||||||||||||||||| || |||||||| | ||||||||| Sbjct 3143 AGCCCGTTCCCTCGGCTGTGGTTTCGCTAGA-AGCAGATAGGGACAGTAGGAATCTCGTT 3201 Query 25958 AATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 ||||| |||||||||||||||||||||||||||| Sbjct 3202 AATCCATTCATGCGCGTCACTAATTAGATGACGA 3235 Score = 89.7 bits (98), Expect = 3e-13 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 19949 CTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGCGG 20008 |||| |||||||| ||| ||| |||||||||||||||||||||||||||||||||| | Sbjct 5014 CTCTTTTCAAAGTGCTTGTCATCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCCAGC 5073 Query 20009 TAATATTTAGCCTT 20022 ||||||||||| Sbjct 5074 CGCTATTTAGCCTT 5087 >seq449 Length=3840 Score = 98.7 bits (108), Expect = 7e-16 Identities = 68/77 (88%), Gaps = 0/77 (0%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| ||||||||||||| || |||||||||||||||||||| ||||||||||||| | Sbjct 3784 CTCTCTTTTCAAAGTTCTTTGCATCTTTCCCTCACGGTACTTGTACGCTATCGGTCTCCC 3725 Query 20007 GGTAATATTTAGCCTTA 20023 |||||||||| ||| Sbjct 3724 ACCAATATTTAGCTTTA 3708 >seq135 Length=363025 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 38109 ACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCT 38168 |||||||||||||| ||||||||| || ||||| ||||| | | || |||| || Sbjct 298647 ACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGACCGTCCTCG 298706 Query 38169 AATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATA 38228 | || || || || || || || | || || || | |||| ||| || |||||| | Sbjct 298707 AGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGA 298766 Query 38229 ATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTTTA 38288 || || ||||||||||| | ||| || ||||| || | || ||||| || Sbjct 298767 ATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGCCTCAACCTCCAGGGTGATAGTCTTT 298826 Query 38289 CCCGTCAAGGTTTTCACGAATATCTGCAT 38317 || |||||||| || || || |||||||| Sbjct 298827 CCAGTCAAGGTCTTGACAAAAATCTGCAT 298855 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334943419911506