Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq759 187 3e-42 seq898 87.8 2e-12 >seq759 Length=98512 Score = 187 bits (206), Expect = 3e-42 Identities = 810/1266 (64%), Gaps = 50/1266 (4%) Strand=Plus/Minus Query 62462 AGTTCACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGA 62521 ||||||||||| | ||||| || | | | || | ||||||||| || | |||||| | Sbjct 48767 AGTTCACAACTGGTCTCTACAGCGCTGAAGTAGAGGGTTTCGAAAATATCCTTATTCAAC 48708 Query 62522 TCTTGCGCTTCCAGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCTGCTAATCCT 62581 || | ||| || || ||||| || | ||||||||| | |||||| | || Sbjct 48707 TCACGAGCTCCCTCACTCTCAAACGGCATGCGCATGAGAATAAATGTGTCTGCAAGCCCC 48648 Query 62582 TGAACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGA 62641 |||| || ||||| || || | || | | | || || | | |||||| | |||||| Sbjct 48647 TGAATTCCGATACCAATTGGGCGGTGGCGCATGTTGGAATTCTTAGCTTCCTGGATAGGA 48588 Query 62642 TAATAATTAATATCTATAATTTTATTGAGATTTCTGACAATTA-CTTTGAC-CACATC-- 62697 || | || | || || | ||| || ||||| | ||| | ||| | | ||| | Sbjct 48587 TAGAAGTTGACGTCGATTACTTTGTTAAGATTGCGCGCAACCATCTTCGTCACACGGCGA 48528 Query 62698 ----CTTCAGTTTGAGAAAATCA---AATCGC-CCATCT---------ATTACAAACATG 62740 |||| ||| | || | | | | |||||| ||||||||| || Sbjct 48527 AGGGCTTCG---TGATCATATGACGGAGTGGAACCATCTTCCGGAACAATTACAAACTTG 48471 Query 62741 TTCAATGCAACAGATGCCAGATTACAAACGGCTACCTCATTAGCATCCGCATATTGTATT 62800 || | |||| ||| |||| || ||||| || ||||||| | | | ||| | | Sbjct 48470 TTGAGGGCAATAGAAGCCAAGTTGCAAACAGCAACCTCATCCGGGGCAGTATACTCAACA 48411 Query 62801 ATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTG 62860 ||||| ||||||||||| | | ||||||||||| | ||||| || || ||||| | Sbjct 48410 ATCTCTGTGCAAAGATTGGAAGATTTGATGGTTCCGAGGTTTTGCTGGTTGCTCTTCCGG 48351 Query 62861 TTACACGCATCCTTATAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATC 62920 ||||| |||||||| || || ||| | ||| | |||||||||||||| | ||| | ||| Sbjct 48350 TTACAAGCATCCTTGTAGAGCATGTACGGATTTCCAGTTTCAATCTGGGCTTCGAGAATA 48291 Query 62921 GCTTTCCAGA--CGACTCGAGCCTTTATTATAGATTTGTAT-CTC--TTTTCTCTTTCGT 62975 || | ||||| |||| || | || || || | ||| || | |||| Sbjct 48290 GCATACCAGATCTTTCTCGCGC-----TCATGGAACTGCGTGCTCGGCCGTCCTTCTCGT 48236 Query 62976 ATAGTGTATACAATCGTTCGAACTCGTCTCCCCAAACATTGTCCAGTCCAGGACATTCAT 63035 | | |||| ||| || || || | || | | |||| ||||| | |||| Sbjct 48235 ACTTTTCGTACAGCTCTTCAAATTCAGTGCCATAGACGTCGGCCAGACCAGGGGACTCAT 48176 Query 63036 CCGGACACATCAACGACCACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAA 63095 |||||| | | |||||||| || ||| | | || || ||||||||||| || || | Sbjct 48175 TCGGACAGAAAAGCGACCACTGGCCATCAGCTTCGACGCGCTTCATAAAGAGGTCTGGGA 48116 Query 63096 TCCAAAGAGCTATA-AATAGATCTCTGGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTA 63154 |||| || || || || || || | | || ||||| || || || |||||| | Sbjct 48115 TCCATAG-GCCGTAGAAGAGGTCACGAGCCCTCTGTTCTTCCTTGCCATGATTCTTGCGA 48057 Query 63155 AGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCA 63214 ||||| || || | | ||||| | ||||| || ||||| || || || | | || Sbjct 48056 AGATCAAGAAAGTCGAGGATATCTGCGTGCCAAGGCTCCAAATAGATAGCAAATGCACCC 47997 Query 63215 GGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATT 63274 ||| || || || || || | || ||||| |||| ||| | || | | ||| Sbjct 47996 TTCCGCTTCCCGCCACCTTGGTCCACATACCTAGCTGTGTCATTGAAGACACGAAGCATA 47937 Query 63275 GGAATAATACCATTGGATGTACCATTGGTCCCTGAGATATAGCTTCCACT---GGCA-CG 63330 || | ||| || || || ||||| ||||| || ||| || | ||| ||| || Sbjct 47936 GGCACAATTCCGTTCGACGTACCGTTGGTACCACGGATGTA----CGACTTTGTGCATCG 47881 Query 63331 AATATTACTAATTGATAGACCTATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTT 63390 || || || || | || || || ||||| || || || | ||||| || || Sbjct 47880 GATGTTGTGGATAGACAATCCAATGCCGCCTGCGGCCTTGGAAATGATAGCGCAGCGCTT 47821 Query 63391 TAACGTATCATAGATGCCCTCTATACTATCATCCATCATGTTAAGTAGAAAACAGCTAGA 63450 | || ||||| ||||| || || || || |||| | || || || || || Sbjct 47820 GAGAGTGTCATAAATGCCTTCAATGGAGTCCTCAGTCATAGTGAGAAGGAAGCAAGAGGA 47761 Query 63451 CATTTGGTGACGACTAGTTCCCGCATTAAATAAGGTAGGAGAAGCGTGAGTAAACCATTT 63510 | ||| | || | || || ||||| |||| || || || || || || || || Sbjct 47760 TAGCTGGGGGCGGCAGGTGCCTGCATTGAATAGCGTTGGCGAGGCATGGGTGAAGAGCTT 47701 Query 63511 TTCAGAAAGTAGATTGTACGT-CTCA--ATAGCTGAGTCTATATCCCATTGATGAATTCC 63567 | || || || || || | || || ||| || ||||| | | ||||| || Sbjct 47700 GTTGGACAGGGCATCATATGTGCCCAGGATGGCT---TCCATATCGCCGAGGTGAATGCC 47644 Query 63568 TACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAACGATCTTGTTGTTTATTTTCAA 63627 ||||| |||||||| | ||| ||||| || || || || ||||| ||| || | Sbjct 47643 GACTGCCACACGCATGAGCATATGCTGGGGCCTCTCCACAATCTTTCCGTTGATGCGGAG 47584 Query 63628 CAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTA 63687 || || || |||||||| ||||| ||||| |||| || ||||| || | ||||| Sbjct 47583 CAGATACGAGCGCTCCAAAGTCTTAAATCCAAAGTAGTCATACGAAAAATCCCTGTCGTA 47524 Query 63688 AATAAT 63693 ||||| Sbjct 47523 GATAAT 47518 >seq898 Length=425369 Score = 87.8 bits (96), Expect = 2e-12 Identities = 150/210 (71%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 32657 CAAACATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGT 32716 || ||| ||| ||||| || | || ||||| | | || | |||||| || || || Sbjct 413338 CAGACAGGCGTGGTCGCAATGCAACCCTTCGTCACGAGAGATGAGTTCGTTAGAGAAGGT 413397 Query 32717 GAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAAT-GATCCAGAAA 32775 ||| || ||||| | ||||||||| || || | || |||| |||||| || || || | Sbjct 413398 GAGGCCCGGCATCAAGCCACGCTTCTTGAGGTAGAAAATGG-CGCAAAAAGAGCCCGAGA 413456 Query 32776 AGAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAACCGGCGCTGTCAT 32835 ||||||| || || || || |||||||| | |||| |||| | ||| || |||| | Sbjct 413457 AGAAAATGCCCTCCACGGCGGCAAAGGCCACGAGTCGCTCTGCG-AACGAGCCCTGTGAG 413515 Query 32836 GTA-TCCA-CTTTTGAGCCCAATCGGCCTT 32863 | | |||| | || |||||||||||||| Sbjct 413516 GAAATCCAGCGAATG-GCCCAATCGGCCTT 413544 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633624665709600