Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq135 100 2e-16 seq210 96.9 3e-15 >seq135 Length=363025 Score = 100 bits (110), Expect = 2e-16 Identities = 152/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 24998 AATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTC 25057 |||||| || ||||| ||||| | || || || | || || | || || ||||| || Sbjct 298628 AATGCAGATTTTTGTCAAGACGCTAACAGGCAAGACAATTACCCTTGAGGTCGAGTCTTC 298569 Query 25058 TGACACTATCGAGTCACTGAAG-CAAAAAATCACTGACAAAGAAGGGATTCCACCTGACC 25116 |||||||| ||| ||||| | || | ||| || || || || || |||||||||| Sbjct 298568 GGACACTATTGAGAACGTGAAGACTAAGATTCAG-GATAAGGAGGGTATCCCACCTGACC 298510 Query 25117 AACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACA 25176 | ||| || |||| || |||||||| || | || |||| || || || ||| |||| Sbjct 298509 AGCAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGACGTACGTTGAACGACTACA 298450 Query 25177 ATATTCAAAAAGAATCCACGCTACATTTAGTGCT 25210 | || || || ||||| || || ||| | ||||| Sbjct 298449 ACATCCAGAAGGAATCTACCCTCCATCTGGTGCT 298416 >seq210 Length=341256 Score = 96.9 bits (106), Expect = 3e-15 Identities = 146/208 (70%), Gaps = 0/208 (0%) Strand=Plus/Minus Query 24994 GAACAATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGT 25053 ||| |||||| || ||||| ||||| | || ||||| | || || | || || ||| Sbjct 96593 GAAAAATGCAGATCTTTGTGAAGACCCTCACGGGTAAGACGATTACTCTTGAGGTCGAGG 96534 Query 25054 CGTCTGACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTG 25113 | ||||| | |||| | ||||| || ||| |||||||| || ||||| || | Sbjct 96533 CCTCTGATAACATCGCGAATGTGAAGACTAAGATCCAGGACAAAGAGGGCATTCCTCCCG 96474 Query 25114 ACCAACAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATT 25173 |||| ||||| | || || || ||||| || | || |||||||||||| || || | Sbjct 96473 ACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGATCGCACTCTGTCAGACT 96414 Query 25174 ACAATATTCAAAAAGAATCCACGCTACA 25201 |||| || || || ||||| || || || Sbjct 96413 ACAACATCCAGAAGGAATCGACTCTTCA 96386 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433323109622690