Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq135 98.7 8e-16 >seq135 Length=363025 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || || || || || || |||| || || || || || | Sbjct 298855 ATGCAGATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCCTGGAGGTTGAGGCCTCG 298796 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || ||||| ||||||||||| || || || || || Sbjct 298795 GACACTATTGAGAATGTGAAGACGAAGATTCAGGACAAGGAGGGCATCCCGCCTGACCAG 298736 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || || ||||| ||| | ||||| ||||| |||| || |||||| Sbjct 298735 CAGAGGCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACTACAAC 298676 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || ||||| || || || | ||||| ||| | || | || ||||| Sbjct 298675 ATCCAAAAGGAGTCTACTCTTCATTTGGTTCTTCGTCTCCGTGGAGG 298629 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | ||||| || || |||| || || || || | | Sbjct 299083 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTCGAGTCTTCG 299024 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || ||||| |||||||| || || || || || || Sbjct 299023 GACACCATTGAGAACGTGAAGACTAAGATTCAGGACAAGGAAGGAATCCCGCCTGACCAG 298964 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || ||| | ||||| ||||||| | |||||||||||| Sbjct 298963 CAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTTTCCGATTACAAC 298904 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||| || |||||||| | || || || |||| | || || ||| Sbjct 298903 ATTCAGAAGGAATCCACTCTCCACTTGGTGCTGCGTCTTCGTGGTGGT 298856 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| || || || || | | Sbjct 297943 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTGGAGGTCGAGTCTTCG 297884 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || ||||| |||||||||||||| || || ||||| Sbjct 297883 GACACCATCGAGAACGTTAAGACTAAGATTCAGGACAAGGAGGGTATCCCGCCTGATCAG 297824 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || |||||||| ||| | |||||| || || | ||| |||||| Sbjct 297823 CAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACAAC 297764 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| ||| | ||| | || | || | ||||| ||| Sbjct 297763 ATCCAGAAGGAATCTACCCTCCATCTGGTGCTTCGTCTACGCGGTGGT 297716 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || ||||| || || | || || || || |||| ||||| || || | | Sbjct 298399 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCTTCG 298340 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | | || || ||||| |||||||||||||| || || || || Sbjct 298339 GACACCATCGAGAACGTTAAGACTAAGATTCAGGACAAGGAGGGTATCCCGCCTGACCAG 298280 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || |||||||| ||| | |||||| || || | ||| |||||| Sbjct 298279 CAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACAAC 298220 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| ||| | ||| | || | || | ||||| ||| Sbjct 298219 ATCCAGAAGGAATCTACCCTCCATCTGGTGCTTCGCCTTCGCGGTGGT 298172 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| |||||||| || || |||| || || || | || ||||| || || | | Sbjct 298627 ATGCAGATTTTTGTCAAGACGCTAACAGGCAAGACAATTACCCTTGAGGTCGAGTCTTCG 298568 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || | | || || ||||| || ||||||||||| ||||| || || Sbjct 298567 GACACTATTGAGAACGTGAAGACTAAGATTCAGGATAAGGAGGGTATCCCACCTGACCAG 298508 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || | ||||| || |||||||| ||| | |||||| || || | ||| |||||| Sbjct 298507 CAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGACGTACGTTGAACGACTACAAC 298448 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 || || || ||||| ||| | ||| | || | || | ||||| ||| Sbjct 298447 ATCCAGAAGGAATCTACCCTCCATCTGGTGCTTCGCCTTCGCGGCGGT 298400 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419723263107190