Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq594 102 2e-16 >seq594 Length=586499 Score = 102 bits (112), Expect = 2e-16 Identities = 427/662 (65%), Gaps = 14/662 (2%) Strand=Plus/Minus Query 279706 TGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTGCGTGCCGATG 279765 |||| || || ||| ||||||||||||||| | || ||||| || | |||||| Sbjct 310900 TGTCCGGCGGCTGGCGCATGAAGCTGGCCCTCGCACGTGCCATGCTCCAAAATGCCGACA 310841 Query 279766 TCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCCTGGCTAGTGT 279825 |||| || |||||||| || |||||||| | || || |||||| ||| | | | Sbjct 310840 TCCTTCTCCTTGATGAACCCACCAACCATCTTGATGTCATCAACGTTAAGTGGGTCGAGG 310781 Query 279826 CCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGACTCTGGCTTCC 279885 |||| | | | || ||| | || | | |||| || || ||||| || | Sbjct 310780 ACTACTTGAATAACCTCAAGGACGTCACGAGCATCATCGTTTCACACGATAAGGGGCTAT 310721 Query 279886 TAGATGCCGTG-TGCTCTGCCATCATTCACTATGAGCAAAATCTGAAGCTCTCCAAGCAC 279944 | || || ||| || ||||| || ||| ||||||||||||| |||| Sbjct 310720 T-GAACAATTGCTGCACTCATATCATCCAGATTGA---AAATCTGAAGCTCAAGCTGCAC 310665 Query 279945 ATCGGCAACCTGTCTGCTTTCGTGGCAAAGCGCCCTGAGGCGGCCGCCTACTATGACCTG 280004 | |||||| || | | || || ||| ||| ||||| |||||| ||| || Sbjct 310664 AAGGGCAACTTGACCGAATTTGTCAAGAAGGTCCCCAAGGCGAGGACCTACTTTGAGCTC 310605 Query 280005 AAGGACGCCACCGCCAAGTGGGAATTCCCTGAGCCAGGGTTTCTGGAGGGCATCACATCA 280064 ||||| ||| ||||| | || || ||||||| |||| |||||||| || Sbjct 310604 AAGGAGACCAAGCTCAAGTTTAAGTTTCCCAAGCCAGGAAACTTGGATGGCATCACCTCC 310545 Query 280065 AAGGATCGCGCAATCATGAAGCTCCGTGGCGTCTCCTTTGCTTATCCCAATG---GCC-C 280120 |||| | || ||||| ||| | |||| ||| | || |||| | ||| | Sbjct 310544 AAGGGTAAGGCCATCATTAAGATGGACAACGTCATCTTCACGTACCCCAGCGCCAGCCGC 310485 Query 280121 CAACATCTT-CAGCAGTGTCAACTCGCAGGTTTCTATGAACTCACGGATTGGTGTCATTG 280179 | || || | | || | | ||| | | || || |||||| ||| | || | Sbjct 310484 CCGCAGATTGCCGGCGTCACCATTCGTTGTTCCCT-TGC-CTCACGTGTTGCTTGTATCG 310427 Query 280180 GACCCAATGGTGCGGGTAAGTCTACCCTAATCAAAGTCCTGACTGGCGAGACCCAGGCC- 280238 | ||||||||||| || ||||| || | |||| | |||| || ||| || || Sbjct 310426 GTCCCAATGGTGCCGGAAAGTCCACTATTGTCAAGCTGTTGACAGGGGAGTTGGAGCCCG 310367 Query 280239 ACTGAGGGGTCCGTTTGGAAGCATCCCAACATGCGGATGGCTTACGTCGCTCAGCACGCT 280298 ||| ||| || ||||||||| ||||| || || | ||| | || ||||| || Sbjct 310366 ACTCAGGAAAT-GTGTGGAAGCATGCCAACGCCCGTATTGGCTACATTGCCCAGCATGCG 310308 Query 280299 TTCCACCACATCGAGAACCACCTGGACATGACTCCTAACCAATACATTCAGTGGCGCTAT 280358 ||||| ||||| ||||| || |||| | ||| || ||| | ||||| | |||||||||| Sbjct 310307 TTCCATCACATTGAGAATCATTTGGAGAAGACGCCCAACGAGTACATCCGGTGGCGCTAT 310248 Query 280359 GC 280360 || Sbjct 310247 GC 310246 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027824605358766