Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq135 187 5e-42 seq210 136 7e-27 seq594 107 4e-18 seq55 86.0 1e-11 >seq135 Length=363025 Score = 187 bits (206), Expect = 5e-42 Identities = 180/231 (78%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 ||||| ||||| || | || | || || || ||||| || |||||||| || |||||| Sbjct 299085 CCTCCACGAAGACGAAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAG 299144 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || ||||| | |||||| |||||||| ||||| || || ||||| || || Sbjct 299145 AGGGTGCGTCCGTCTTCAAGCTGCTTACCGGCGAAGATGAGCCTCTGCTGGTCAGGGGGG 299204 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 |||||||||||||| |||||||| | ||| || |||||||||||| | || || || Sbjct 299205 ATGCCTTCCTTGTCCTGAATCTTCGTCTTCACATTCTCGATGGTGTCCGAGGACTCGACC 299264 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATG 68465 || | |||||||| || || ||||||||||||||||| |||||||| ||| Sbjct 299265 TCGAGAGTGATGGTCTTCCCGGTGAGGGTCTTGACGAAAATCTGCATGATG 299315 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| |||| |||||||| || ||||| || || || ||||| |||||||| Sbjct 298857 CCACCACGAAGACGCAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCGGAA 298916 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| || ||||| || | | || ||||| || || Sbjct 298917 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 298976 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || ||||||||||| |||||||| | ||| ||| ||| |||||||| | || || || Sbjct 298977 ATTCCTTCCTTGTCCTGAATCTTAGTCTTCACGTTCTCAATGGTGTCCGAAGACTCGACC 299036 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || || ||||||||||||||||| |||||||| Sbjct 299037 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 299083 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||||||||| | |||| || || || || || || |||||||| || ||| Sbjct 297945 CCACCGCGAAGGCGAAGCACCAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGTTC 298004 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||| || | |||||| || ||||| || || || || || || ||||| Sbjct 298005 AACGTACGCCCATCCTCGAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGATCAGGTGGG 298064 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | ||| ||| |||||||||||| | || || || Sbjct 298065 ATACCCTCCTTGTCCTGAATCTTAGTCTTCACGTTCTCGATGGTGTCCGAAGACTCGACC 298124 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || ||||||||||||||||| || |||||||| Sbjct 298125 TCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 298171 Score = 170 bits (188), Expect = 4e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||||||||| | |||| || || || || || || |||||||| || ||| Sbjct 298173 CCACCGCGAAGGCGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTC 298232 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||| || | |||||| |||||||| || || || || ||||| || || Sbjct 298233 AACGTACGCCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGCGGG 298292 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | ||| ||| |||||||||||| | || || || Sbjct 298293 ATACCCTCCTTGTCCTGAATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGACC 298352 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||||||||| || ||||||||||||||||| || |||||||| Sbjct 298353 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 298399 Score = 161 bits (178), Expect = 2e-34 Identities = 172/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| || || | |||| || || || || || || |||||||| || ||| Sbjct 297717 CCACCGCGTAGACGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTC 297776 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||| || | |||||| |||||||| || || || || || || || || Sbjct 297777 AACGTACGCCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCAGGCGGG 297836 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| |||||||| | ||| ||| |||||||||||| | || || || Sbjct 297837 ATACCCTCCTTGTCCTGAATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGACC 297896 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 |||| ||||||||| || ||||||||||||||||| || |||||||| Sbjct 297897 TCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 297943 Score = 156 bits (172), Expect = 8e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 ||||||| || || || | ||||| || || || ||||| ||||||||||| || || | Sbjct 298627 TTCCTCCACGGAGACGAAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAG 298686 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || | || || || | |||||| || ||||| || || || || ||||| || | Sbjct 298687 AGAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGCG 298746 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | ||||| |||||||| |||||||| | ||| || ||| || ||||| | | || | Sbjct 298747 GGATGCCCTCCTTGTCCTGAATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGCCTCAA 298806 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | |||| |||||| || ||||| || | ||||||||| || |||||||| Sbjct 298807 CCTCCAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 298855 Score = 136 bits (150), Expect = 7e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||||||||| | |||| || || || || || || |||||||| || ||| Sbjct 298401 CCGCCGCGAAGGCGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTC 298460 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || | |||||| |||||||| || || || || ||||| ||||| Sbjct 298461 AACGTACGTCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGTGGG 298520 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||| || |||||||| | ||| ||| ||| || ||||| | || || || Sbjct 298521 ATACCCTCCTTATCCTGAATCTTAGTCTTCACGTTCTCAATAGTGTCCGAAGACTCGACC 298580 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | ||| || || || || || || |||||||| || ||||||||| Sbjct 298581 TCAAGGGTAATTGTCTTGCCTGTTAGCGTCTTGACAAAAATCTGCATT 298628 >seq210 Length=341256 Score = 136 bits (150), Expect = 7e-27 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || |||||||| ||||| || | ||| || || || || || |||||||| || || || Sbjct 96362 CCACCGCGAAGACGCAACACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCTGAC 96421 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | |||| || | |||||| || ||||| ||||| | || |||||||| ||| Sbjct 96422 AGAGTGCGATCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGA 96481 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| || ||||| || ||||| | ||| || | ||||| | || | | || || Sbjct 96482 ATGCCCTCTTTGTCCTGGATCTTAGTCTTCACATTCGCGATGTTATCAGAGGCCTCGACC 96541 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || | || || || || |||||||||||||| || || ||||||||| Sbjct 96542 TCAAGAGTAATCGTCTTACCCGTGAGGGTCTTCACAAAGATCTGCATT 96589 >seq594 Length=586499 Score = 107 bits (118), Expect = 4e-18 Identities = 137/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 224975 GCATACCGCCACTGGATGTACTGGTTGGGGGTCATGTCCAGGTGGTTCTCAATATGGTGG 225034 ||||| |||||| ||||||||| |||||| ||| | |||| || |||||||| || ||| Sbjct 310246 GCATAGCGCCACCGGATGTACTCGTTGGGCGTCTTCTCCAAATGATTCTCAATGTGATGG 310305 Query 225035 AAAGCATGCTGGGCTACGTACGCCATGCGCATGTTGGGATGCTTCCACACAGAGCCCCGA 225094 || ||||||||||| | ||| | || || ||||| ||||||||||||| || || Sbjct 310306 AACGCATGCTGGGCAATGTAGCCAATACGGGCGTTGGCATGCTTCCACACA-TTTCCTGA 310364 Query 225095 GTC-GGTTGTGCCTCGCCGGTGAGGACCTTGATGAGCGTAGTCTTGCCCGCACCATTGGG 225153 ||| || | ||| || || | | ||||| | || | ||| || ||||||||||| Sbjct 310365 GTCGGGCTCCAACTCCCCTGTCAACAGCTTGACAATAGTGGACTTTCCGGCACCATTGGG 310424 Query 225154 GCCAAT 225159 || || Sbjct 310425 ACCGAT 310430 >seq55 Length=33196 Score = 86.0 bits (94), Expect = 1e-11 Identities = 128/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Plus Query 173096 GAAAAAATTGACACGATTATGCACTTTGCTGCGCAG-ACCCATGTGGACAACTCGTTCGG 173154 || || || ||||| || ||||||||||| || ||| |||||||| ||||| |||||| Sbjct 18019 GAGAATATCGACACTATCATGCACTTTGCCGC-CAGCACCCATGTTGACAATTCGTTCCA 18077 Query 173155 TAACTCGCTGGCATTTACCATGAACAACGTCTACGGGACCCACGTTCTCCTGGAATGCGC 173214 | ||| | | || || || || ||| ||| |||||||| || || || ||| Sbjct 18078 TTCCTCAATTTCCTTCACGTCCAATAATGTCGTCGGCACCCACGTGCTGCTCGAGGCCGC 18137 Query 173215 GAGGCTCTATGGCGGTGTCCAGCGGTTCATCAATGTGTCTACCGACGAAGTATACGGCG 173273 ||| ||| || ||||| |||| || || |||| ||||| || || || ||||||| Sbjct 18138 AAGGGACTACGGTGGTGTTAAGCGCTTTATTCATGTTTCTACGGATGAGGTCTACGGCG 18196 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921611732220720