Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq135 120 3e-22 seq210 100 2e-16 >seq135 Length=363025 Score = 120 bits (132), Expect = 3e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| ||||| || | || || || || | || ||||| || ||||||||||||||| Sbjct 298854 ATACCACCACGAAGACGCAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCG 298913 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || || || || || || |||||| |||| | |||||| ||||| || Sbjct 298914 GAAAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGC 298973 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| |||||| || | | |||| |||||| | || ||| Sbjct 298974 GGGATTCCTTCCTTGTCCTGAATCTTAGTCTTCACGTTCTCAATGGTGTCCGAAGACTCG 299033 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 114386 || |||| ||| | || |||||||| || || || || |||||||||||| || Sbjct 299034 ACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGCCT 299087 Score = 102 bits (112), Expect = 7e-17 Identities = 161/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | || | ||| | ||||| || || || |||||||| ||| Sbjct 299082 ATGCCTCCACGAAGACGAAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCG 299141 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || || |||||||| || ||||| ||| ||||||| | ||| ||||| || Sbjct 299142 GAGAGGGTGCGTCCGTCTTCAAGCTGCTTACCGGCGAAGATGAGCCTCTGCTGGTCAGGG 299201 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || |||||||| ||||| |||||| || | | || | |||||| | ||| ||| Sbjct 299202 GGGATGCCTTCCTTGTCCTGAATCTTCGTCTTCACATTCTCGATGGTGTCCGAGGACTCG 299261 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | || || ||||| || || || || |||||||||||| Sbjct 299262 ACCTCGAGAGTGATGGTCTTCCCGGTGAGGGTCTTGACGAAAATCTGCATG 299312 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 |||||||| || || | | || | ||| | |||||||| || || |||||||| ||| Sbjct 298398 ATACCGCCGCGAAGGCGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCG 298457 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 ||| ||||| ||| || || || || || ||| |||| || | ||| ||||| || Sbjct 298458 TTCAACGTACGTCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGT 298517 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || || || |||||| || | | |||| ||||| | || ||| Sbjct 298518 GGGATACCCTCCTTATCCTGAATCTTAGTCTTCACGTTCTCAATAGTGTCCGAAGACTCG 298577 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | || ||||| || || || || |||||||||||||| Sbjct 298578 ACCTCAAGGGTAATTGTCTTGCCTGTTAGCGTCTTGACAAAAATCTGCAT 298627 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || || ||||| || | | ||| ||||| | ||||| || ||||| |||||||| || Sbjct 298626 ATTCCTCCACGGAGACGAAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCA 298685 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||| ||| || || || || || |||||| |||| || | ||| ||||| || Sbjct 298686 GAGAGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGC 298745 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| |||||| || | | |||| ||||| | || || Sbjct 298746 GGGATGCCCTCCTTGTCCTGAATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGCCTCA 298805 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| ||| | || || || |||| || || |||||||||||||| Sbjct 298806 ACCTCCAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 298855 >seq210 Length=341256 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| || || || | ||| || | || | || ||||| || || |||||||| || Sbjct 96361 ACCACCGCGAAGACGCAACACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCTGA 96420 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || ||| ||| ||| || || || || |||||| ||||||||||||| ||||| ||||| Sbjct 96421 CAGAGTGCGATCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGG 96480 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 |||||| |||||||| ||||| || | | | | | | || | || ||||| Sbjct 96481 AATGCCCTCTTTGTCCTGGATCTTAGTCTTCACATTCGCGATGTTATCAGAGGCCTCGAC 96540 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | || | ||| || || || || || || ||||| |||||||| Sbjct 96541 CTCAAGAGTAATCGTCTTACCCGTGAGGGTCTTCACAAAGATCTGCAT 96588 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420129658520712