Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq759 226 5e-54 seq898 131 3e-25 seq387 122 2e-22 >seq759 Length=98512 Score = 226 bits (250), Expect = 5e-54 Identities = 517/776 (67%), Gaps = 4/776 (1%) Strand=Plus/Minus Query 244664 ACAAACTCGTTGAGGGCGACGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTG 244723 ||||||| ||||||||| | |||| |||||| || || ||||| |||| | || Sbjct 48479 ACAAACTTGTTGAGGGCAATAGAAGCCAAGTTGCAAACAGCAACCTCATCCGGGGCAGTA 48420 Query 244724 TACTGGACAATCTCGGTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTG 244783 |||| |||||||| ||||| || || | |||||||| || |||| || || ||| Sbjct 48419 TACTCAACAATCTCTGTGCAAAGATTGGAAGATTTGATGGTTCCGAGGTTTTGCTGGTTG 48360 Query 244784 GACTTGGCGTTGCAGGCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCG 244843 ||| ||| || || ||||||||||||||| | || || || || | |||||| Sbjct 48359 CTCTTCCGGTTACAAGCATCCTTGTAGAGCATGTACGGATTTCCAGTTTCAATCTGGGCT 48300 Query 244844 ACGAGGACGCTGTTCCAGAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCC 244903 |||| | | ||||| | || || | | | ||||| || ||| || | Sbjct 48299 TCGAGAATAGCATACCAGATCTTTCTCGCGCTCATGGAACTGCGTGCTCGGCCGTCCTTC 48240 Query 244904 TCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCAC 244963 ||||| |||||| | || || || | ||| |||| ||| | || || ||| || Sbjct 48239 TCGTACTTTTCGTACAGCTCTTCAAATTCAGTGCCATAGACGTCGGCCAGACCAGGGGAC 48180 Query 244964 GACGCCGGGCACATGAGACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCG 245023 ||| || | || ||||| ||| | | | ||| | || ||| |||||||| Sbjct 48179 TCATTCGGACAGAAAAGCGACCACTGGCCATCAGCTTCGACGCGCTTCATAAAGAGGTCT 48120 Query 245024 GGGATCCAGAGGGCCTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTC 245083 |||||||| ||| | | ||||||||| | | |||||| || ||| |||| ||||| Sbjct 48119 GGGATCCATAGGCCGTAGAAGAGGTCACGAGCCCTCTGTTCTTCCTTGCCATGATTCTTG 48060 Query 245084 CTCAGCTCCAAAAAGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCG 245143 | || || | |||||| | || || ||||||| ||||||| |||| ||| | || Sbjct 48059 CGAAGATCAAGAAAGTCGAGGATATCTGCGTGCCAAGGCTCCAAATAGATAGCAAATGCA 48000 Query 245144 CCGGGCCGCTTGTTGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGG 245203 || |||||| ||| || |||||||| ||| | | ||||||| || || Sbjct 47999 CCCTTCCGCTTCCCGCCACCTTGGTCCACATACCTAGCTGTGTCATTGAAGACACGAAGC 47940 Query 245204 GTAGGCACTATGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCT--TGCCCC 245261 ||||||| || ||||| || |||||||| || |||||| || | | ||| | Sbjct 47939 ATAGGCACAATTCCGTTCGACGTACCGTTGGTACCACGGATGTA--CGACTTTGTGCATC 47882 Query 245262 TGAGGTTGCTGATGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCT 245321 || |||| ||| |||| || | ||||| ||| |||||| |||| ||||||| || Sbjct 47881 GGATGTTGTGGATAGACAATCCAATGCCGCCTGCGGCCTTGGAAATGATAGCGCAGCGCT 47822 Query 245322 TGATGGTGTCTGCTATGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGG 245381 ||| ||||| ||||| || ||| |||| |||| |||| || ||||| |||| Sbjct 47821 TGAGAGTGTCATAAATGCCTTCAATGGAGTCCTCAGTCATAGTGAGAAGGAAGCAAGAGG 47762 Query 245382 ACAGCTGGGGCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAG 245437 | |||||||| | | ||| | ||||| || || || ||| ||||| ||| Sbjct 47761 ATAGCTGGGGGCGGCAGGTGCCTGCATTGAATAGCGTTGGCGAGGCATGGGTGAAG 47706 >seq898 Length=425369 Score = 131 bits (144), Expect = 3e-25 Identities = 208/296 (70%), Gaps = 3/296 (1%) Strand=Plus/Minus Query 42691 CGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCT 42750 |||||| ||| | || || |||||| ||||||| |||||||| |||||||||||| | | Sbjct 413504 CGTTCGCAGAGCGACTCGTGGCCTTTGCCGCCGTGGAGGGCATTTTCTTCTCGGGCTCTT 413445 Query 42751 TCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACG 42810 | | |||| |||| |||||| || | | |||||| || ||||||||||| |||| Sbjct 413444 TTTGCGCCATTTTCTACCTCAAGAAGCGTGGCTTGATGCCGGGCCTCACCTTCTCTAACG 413385 Query 42811 AACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGA-GC 42869 |||||||| | ||||| ||| ||||| | ||| ||||| || || | |||| | Sbjct 413384 AACTCATCTCTCGTGACGAAGGGTTGCATTGCGACCACGCCTGTCTGCTCTATTCGATGA 413325 Query 42870 CACCTCAG--GCACAAGCCCTCGAAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGG 42927 || || ||| ||| || || |||| ||| | ||||| || ||||| | Sbjct 413324 TTCCCAAGGAGCAGCAGCTGTCCGAGCAGCGCATCCACGAGATCATTTGTGACGCCGTCG 413265 Query 42928 AGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAAC 42983 || ||| |||||||| | | |||||||||| || || ||||||||||| Sbjct 413264 AGTGCGAAAAGGAGTTTGTGTCCGAGTCGCTGCCTGTCGATTTGATCGGCATGAAC 413209 >seq387 Length=288413 Score = 122 bits (134), Expect = 2e-22 Identities = 282/420 (67%), Gaps = 9/420 (2%) Strand=Plus/Minus Query 42423 CTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAGGTTCATG 42482 || ||||| |||||||| |||||||| || || || ||||| | | || Sbjct 56661 CTCGCCTTTTTCGCCGCATCTGACGGAATTGTTTTGGAAAACCTTATCGAGCGCTTTTGC 56602 Query 42483 AAAGAGGTGCAGTACTTTGAG--GCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGA 42540 | ||| || ||| ||| || |||||||| || || | ||| ||| ||||| |||| Sbjct 56601 ACAGACGTCCAG--CTTCCAGAAGCGCGCTGTTTTTATGCCTTTCAGGCCGCCATGGAGA 56544 Query 42541 ACGTGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGC 42600 |||||||||| || |||| | |||| | | || || || || || | ||| Sbjct 56543 ACGTGCACTCGGAAATGTATTCACTACTGATTGATACATATATAGCCGACCCTGCGGAGA 56484 Query 42601 GTAACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGG 42660 | |||| |||| |||||| || || ||| | ||| |||||||| |||| Sbjct 56483 AGACACTTTTGTTTGCGGCCGTGGAGAGCATTCCGTGCGTGCGGAAAAAGGCGGAGTGGG 56424 Query 42661 CGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCG 42720 | |||| ||||| || |||||||| ||| | || ||||| || || ||| | | Sbjct 56423 CTCTCAGGTGGATT---AGCTCCGACGCAGGGTTTGTGGAAAGGCTCGTGGCGTTTGCAG 56367 Query 42721 CCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGG 42780 |||| ||||| || ||||| ||||| | || | || | || ||| | ||| ||| || Sbjct 56366 CCGTGGAGGGGATTTTCTTTTCGGGGTCGTTTTGCGCCGTGTTTTGGATGAAGAAGAGGG 56307 Query 42781 TGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCA-GGGACGAGGGGCTGCAT 42839 | ||||| || ||||||||||| ||||| || || | || |||| || ||| ||||| Sbjct 56306 GGCTCATGCCTGGGCTCACCTTCTCCAACGAGCTTAT-ATCACGGGATGAAGGGTTGCAT 56248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944328269273760