Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_009333.1 Length=137969 Score E Sequences producing significant alignments: (Bits) Value seq513 143 2e-29 >seq513 Length=248591 Score = 143 bits (158), Expect = 2e-29 Identities = 389/592 (66%), Gaps = 4/592 (1%) Strand=Plus/Minus Query 20176 CTCTATATGCGTTTTGTAGATGTGGGCATCTCCCAACGTGTGAATAAACTCCCCGGGTCT 20235 ||| | ||| | || |||| |||||||| || | ||| || | ||| ||||| || || Sbjct 25471 CTCCACATGGTTGTTATAGACATGGGCATCCCCTAGCGTATGTACAAAGTCCCCTGGCCT 25412 Query 20236 AAGACCAGTAACATGAGCAAGCATATAAGTTAAGAGGGAATAGCTGGCAATGTTAAAAGG 20295 | |||||| || | |||| || | || | || | ||||| |||||||| || || Sbjct 25411 CAAACCAGTCACTTTTGCAATCAAGCACGTCAGCAGCGCGTAGCTCGCAATGTTGAACGG 25352 Query 20296 AACTCCCAAACCCATGTCTCCCGACCTCTGATACAGCTGACAGGAAAGCTCACCGTCAGC 20355 || || | ||||| || | | ||| |||| ||| || |||||||| || | || Sbjct 25351 CACGCCGAGGCCCATATCGCAACTACGCTGGTACATCTGGCATGAAAGCTCGCCATTCGC 25292 Query 20356 TACATAAAATTGACATAACAAGTGACAGGGCGGAAGCGCCATCAACGACAAGTC--CGCC 20413 || || || || | || || || || || ||||||||| | | ||| | | Sbjct 25291 AACGTAGAACTGCGCCAGCAGATGGCATGGTGGTAGCGCCATCTG-GTCG-GTCGCCACG 25234 Query 20414 GGGTTCCACGCACACATAATGATTCTTCTATCGTGCGGATTATTTTTTATTAAATCCACA 20473 |||||||||||| ||| | ||| | | ||| | ||| || || || | | ||| | Sbjct 25233 GGGTTCCACGCAGACAGGAGGATCCGCCGATCATTCGGGTTGTTCTTCACTGTATCGATC 25174 Query 20474 ATGTACGACAATTGGTCAAACCCCTGGCCTGTATAGTCAGCATCCGCGTCCACGTACGCC 20533 | | | || || || ||||| |||| ||| || || | | || ||| || Sbjct 25173 ACCTCCTTCAGCTGATCTCTCCCCTTTCCTGCATAATCCGCGTGCATATCTGTGTATTCC 25114 Query 20534 GCCCCAAAGTGCCTCCACTGGAAACCGTAAACAGGTCCCAAATCCCCCTCCCTTCTGTGC 20593 ||||||||||||| ||| || || || || || || |||| || ||| || || | | Sbjct 25113 GCCCCAAAGTGCCGCCATTGAAACCCATACACTGGACCCAGGTCGCCCACCTCCCTCTCC 25054 Query 20594 GCCAGGCCGCGCCCGGCCAGGAACTCCCTGGAGCCATTTTTGTCCCATATCTTGACTCCT 20653 | | |||||| |||| ||||| || || || || ||||||||| | || || Sbjct 25053 GGAAACCCGCGCGTATCCAGAAACTCTCTCGACCCGTTCCCGTCCCATATATGCACACCC 24994 Query 20654 GTTCTTGAAAGCTCCCTGGAGTCAGTACTCCCCTTCAGAAACCAAAGCAGCTCTTGCACT 20713 || | | |||| | || || || || |||| | |||||| | || ||| | | Sbjct 24993 TTTTTGGCGAGCTTGTTTGAATCGGTGCTTCCCTGGATAAACCAGAACAACTCCTCTGCC 24934 Query 20714 ACGCCTCGCCAAAACACCCGCTTTGTGGTTAGTAAGGGAAAGTGGTCCCGCA 20765 ||| | ||||||||||||||||| || || | || ||||| || ||||| Sbjct 24933 ACGGCGCGCCAAAACACCCGCTTCGTCGTCAATAGCGGAAACGAGTGCCGCA 24882 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 441367691109840