Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq135 145 2e-29 >seq135 Length=363025 Score = 145 bits (160), Expect = 2e-29 Identities = 175/237 (74%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 288242 CATGTCCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGT 288301 |||| || || || || | ||| |||||||| | || || || ||||| || |||| Sbjct 299081 CATG-CCTCCACGAAGACGAAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGT 299139 Query 288302 CGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAAT 288361 ||| ||| |||||||||||||| | || || || |||||||| || | ||| || | Sbjct 299140 CGGAGAGGGTGCGTCCGTCTTCAAGCTGCTTACCGGCGAAGATGAGCCTCTGCTGGTCAG 299199 Query 288362 CTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATT 288421 ||||| ||||| || ||||| || |||| ||||| || || || | || || | Sbjct 299200 GGGGGATGCCTTCCTTGTCCTGAATCTTCGTCTTCACATTCTCGATGGTGTCCGAGGACT 299259 Query 288422 CTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTATGT 288478 | || ||||| ||||| ||||||||||| || ||||||||||| |||||||| |||| Sbjct 299260 CGACCTCGAGAGTGATGGTCTTCCCGGTGAGGGTCTTGACGAAAATCTGCATGATGT 299316 Score = 122 bits (134), Expect = 2e-22 Identities = 142/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 288282 TTCTTTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAA 288341 ||| || || || || || |||| || ||||| ||||| || | || ||||| ||||| Sbjct 298892 TTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAA 298951 Query 288342 GATCAGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTT 288401 ||||| |||||| || | ||||||||||| || ||||| || || | |||||||| Sbjct 298952 GATCAAACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGAATCTTAGTCTTCACGTT 299011 Query 288402 TTCTATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGAC 288461 || || | || || || || || || ||||| ||||| ||||| || |||||||| Sbjct 299012 CTCAATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGAC 299071 Query 288462 GAATATCTGCAT 288473 ||| |||||||| Sbjct 299072 GAAAATCTGCAT 299083 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179640404137828