Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq594 113 1e-19 >seq594 Length=586499 Score = 113 bits (124), Expect = 1e-19 Identities = 423/658 (64%), Gaps = 13/658 (2%) Strand=Plus/Plus Query 333321 TCTTCACCGGAGGCATAACGCCATTGGATATACTGGTTGGGTGTCATGTCAAGATGATCC 333380 || |||||| | ||||| ||||| |||| |||| |||||| ||| | || | ||||| | Sbjct 310234 TCCTCACCGTACGCATAGCGCCACCGGATGTACTCGTTGGGCGTCTTCTCCAAATGATTC 310293 Query 333381 TCGATGTGGTGGAAAGCATGCTGTGCCACGTAAGCAAGACGCATATTTGGATGCTTCCAA 333440 || ||||| ||||| |||||||| || | ||| ||| ||| || | ||||||||| Sbjct 310294 TCAATGTGATGGAACGCATGCTGGGCAATGTAGCCAATACGGGCGTTGGCATGCTTCCAC 310353 Query 333441 ACACTTCCGTTGGTGGCTTCCATTTGCCCCGTGAGCACCTTAATGAGAGTGCTTTTTCCC 333500 ||| |||| | || |||| | ||| || | || ||| | | |||| ||||| Sbjct 310354 ACATTTCCTGAGTCGGGCTCCAACTCCCCTGTCAACAGCTTGACAATAGTGGACTTTCCG 310413 Query 333501 GCACCATTTTCGCCTACCACACCAATCCTGGAGTTCAGCGATACCTGGGCAT--TCACGT 333558 |||||||| || | | ||| | ||| || || | | || | ||| Sbjct 310414 GCACCATTGGGACCGATACAAGCAACACGTGAGGCAAGGGAA--CAACGAATGGTGACGC 310471 Query 333559 TGTCAAAGATTAGTTTTTCCGTACCCGGATACTTGAACCCCACACCGCGTAGCTTCATGA 333618 | ||| | | | || ||| |||| || | | ||| |||| Sbjct 310472 CGGCAATCTGCGGGCGGCTGGCGCTGGGGTACGTGAAGATGACGTTGTCCATCTTAATGA 310531 Query 333619 TGGCACGGTCCTTCGAAGTGATACCCTCGAGGAACCCGGGCTCGGGGAACTTCCACGTGG 333678 |||| |||| || ||||| || || | | || |||| ||| ||||| || || Sbjct 310532 TGGCCTTACCCTTGGAGGTGATGCCATCCAAGTTTCCTGGCTTGGGAAACTTAAACTTGA 310591 Query 333679 TCTTCGTCTCGGTAAGGGCGTAGTAA---CTCGCTGATTCGGGACGCTTCTTCACGAACT 333735 ||| ||||| | || | |||| ||||| || ||||| |||||| || || | Sbjct 310592 GCTTGGTCTCCTTGAGCTCAAAGTAGGTCCTCGCC--TTGGGGAC-CTTCTTGACAAATT 310648 Query 333736 CGGACAGATTTCCCTTGTACTTCTTCAGCTTTAGGTTAGGTTCGTAATGGATAATAGAGG 333795 ||| || || ||||||| | ||| ||||| || || ||| ||||| ||| | Sbjct 310649 CGGTCAAGTTGCCCTTGTGCAGCTTGAGCTTCAGATT---TTCAATCTGGATGATATGAG 310705 Query 333796 TGCAAACAGCGTCGAGGAACCCGGAGTCGTGTGACACAATCACGCACGAAACGTCCTTAA 333855 |||| | || | | ||| |||||||| || || | || || |||||||| | Sbjct 310706 TGCAGCAATTGTTCAATAGCCCCTTATCGTGTGAAACGATGATGCTCGTGACGTCCTTGA 310765 Query 333856 GGTTGATCAGGTATTCAATCAGCCACCTCACGTTAGACACAGAAAGATGGTTGGTCGGCT 333915 |||| ||| ||| || | |||| | ||||| ||| |||||||||||| || | Sbjct 310766 GGTTATTCAAGTAGTCCTCGACCCACTTAACGTTGATGACATCAAGATGGTTGGTGGGTT 310825 Query 333916 CGTCAAGAAGTAGTAGCTTTGCGTTCAGGAGCATTGCACGTGCAAGAGCGAGTTTCAT 333973 | ||||| || || | | || || ||||||| |||||||| || || || ||||| Sbjct 310826 CATCAAGGAGAAGGATGTCGGCATTTTGGAGCATGGCACGTGCGAGGGCCAGCTTCAT 310883 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102866915018100