Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq759 190 2e-43 seq926 111 2e-19 seq89 111 2e-19 seq387 109 7e-19 seq898 104 3e-17 >seq759 Length=98512 Score = 190 bits (210), Expect = 2e-43 Identities = 468/706 (66%), Gaps = 13/706 (2%) Strand=Plus/Minus Query 114467 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 114526 ||||| || || |||| || || |||| ||||||| |||| ||||| | ||| Sbjct 48467 AGGGCAATAGAAGCCAAGTTGCAAACAGCAACCTCATCCGGGGCAGTATACTCAACAATC 48408 Query 114527 TCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 114586 || || || | ||| ||| || ||||| || | ||| | || || ||| |||| Sbjct 48407 TCTGTGCAAAGATTGGAAGATTTGATGGTTCCGAGGTTTTGCTGGTTGCTCTTCCGGTTA 48348 Query 114587 CACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 114646 || ||||||||||| |||||||| || | || || || | |||| | ||||||||| Sbjct 48347 CAAGCATCCTTGTAGAGCATGTACGGATTTCCAGTTTCAATCTGGGCTTCGAGAATAGCA 48288 Query 114647 TTCCAGACAT----CG-GCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACT 114701 | ||||| | || || ||| || | ||| ||||| || |||| |||||||| Sbjct 48287 TACCAGATCTTTCTCGCGCTCATGGAACTG---CGT--GCTCGGCCGTCCTTCTCGTACT 48233 Query 114702 TTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTG 114761 || ||| || ||||||| || || | | || | || || || | || || | Sbjct 48232 TTTCGTACAGCTCTTCAAATTCAGTGCCATAGACGTCGGCCAGACCAGGGGACTCATTCG 48173 Query 114762 GGCAGAAGAGAGACCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCC 114821 | ||||| || ||||| || ||| | | || || |||||||| |||||||||||||||| Sbjct 48172 GACAGAAAAGCGACCACTGGCCATCAGCTTCGACGCGCTTCATAAAGAGGTCTGGGATCC 48113 Query 114822 AGAGAGCTGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACT 114881 | || | ||||||| || ||| | |||||| | || ||||| || | | Sbjct 48112 ATAGGCCGTAGAAGAGGTCACGAGCCCTCTGTTCTTCCTTGCCATGATTCTTGCGAAGAT 48053 Query 114882 CCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTAC 114941 | | |||||| | |||||| |||||||| || |||| || | || | || ||||| | Sbjct 48052 CAAGAAAGTCGAGGATATCTGCGTGCCAAGGCTCCAAATAGATAGCAAATGCACCCTTCC 47993 Query 114942 G---ACGACCAGCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAA 114998 | | ||| | |||| |||||||| |||||| |||| || || |||||||| || | Sbjct 47992 GCTTCCCGCCACCTTGGTCCACATACCTAGCTGTGTCATTGAAGACACGAAGCATAGGCA 47933 Query 114999 TGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCAT 115058 || || | || || || || || || || ||||| || || || | | Sbjct 47932 CAATTCCGTTCGACGTACCGTTGGTACCACGGATGTACGACTTTGTGCATCGGATGTTGT 47873 Query 115059 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGC 115118 |||| || ||||| || ||||| ||| || || ||||| | ||||| || Sbjct 47872 GGATAGACAATCCAATGCCGCCTGCGGCCTTGGAAATGATAGCGCAGCGCTTGAGAGTGT 47813 Query 115119 CGTAGATCCCGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCA 115164 | || || || || || ||||| | | | | || ||||||||| Sbjct 47812 CATAAATGCCTTCAATGGAGTCCTCAGTCATAGTGAGAAGGAAGCA 47767 Score = 91.5 bits (100), Expect = 2e-13 Identities = 280/429 (65%), Gaps = 8/429 (2%) Strand=Plus/Minus Query 113603 TAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGACAACTTG 113662 ||||||| || ||||| || || ||||||| |||| | |||||| ||| | ||| Sbjct 49346 TAGTACAGTCCTGTCTTCAGTCCTGCCTTCCAGCCATAGAAATGCATGGAGCTGAGCTTT 49287 Query 113663 GAGAGTGTT-GGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCC 113721 | |||| || | ||||| | |||||| || || || ||||||||| || || Sbjct 49286 CCAA-TGTTCGGGGCTGCCATGTGAATGTTCATGCTCTGCGACTGATCGATGTAGGCACC 49228 Query 113722 ACGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCTGTAGAG 113781 || || || || | ||||| | | |||| |||||||||| ||||| ||||||| Sbjct 49227 CCGGTCAGCGGCGAGATCAAGAATACGCTTCTGGCTGATTTCCCAGACAGTCTTGTAGAG 49168 Query 113782 GTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTTGACCAT 113841 | ||||| | || || || ||| ||||| | || ||| ||| || || Sbjct 49167 GGCGCGGATATCTGCAGGAATTTCGGGGATGTTTTGAACAGAACCATTCGCTGCAACTAT 49108 Query 113842 GAGATCCTTCATATCCTTTGA---CCAGAGACCAATCTTTTTGAGATCCTCCACGAGATG 113898 | | | |||||| | || ||| || |||| ||||| ||||||| || || || Sbjct 49107 GCGGTTCTTCATGG---TAGAATCCCACAGCCCAAGCTTTTGAAGATCCTTTACCAGGTG 49051 Query 113899 CTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTA 113958 | || |||| |||||||| | | | || || | ||| | ||||| Sbjct 49050 AGTGTTCACAATGCAGAACTCACCAGACAACACCCTTCGTGTGTACAGATTAGATGTGTA 48991 Query 113959 TGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGGTGC 114018 ||||| ||||||||||||||||| | || || | || || || || ||||| || || Sbjct 48990 AGGCTCGAAGCACTCATTGTTACCGAGAATCTGCGATGTTGAAGCGGTAGGCATTGGAGC 48931 Query 114019 CATGAGAAG 114027 | ||| || Sbjct 48930 AACGAGCAG 48922 >seq926 Length=180086 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 10874 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCG 10933 |||||||||||||| ||||| || | |||||| | |||||||| ||||||||||| || Sbjct 62218 TCAAAGCCATCCATTTCAGTTAATAATTGATTAAGTGTTTGTTCTCGTTCATCATTTCCG 62277 Query 10934 GG-CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 10992 | || ||| | | | ||| ||| ||||| ||||||||||| || ||||| || Sbjct 62278 CCTCCTAT-ACCTGTTCCTCTTTGTCGACCTACGGCATCAATTTCATCAATAAAAACAAT 62336 Query 10993 ACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 ||| ||| |||||| || || ||| | ||||| ||||| || || ||||| Sbjct 62337 ACAAGGTGCATTTTCTTTTGCTTTTTTAAATAAATCTCTAACTCTTGATGCTCCTACACC 62396 Query 11053 CACAAACATTTCCACAAA 11070 ||||||||||| ||||| Sbjct 62397 GACAAACATTTCGACAAA 62414 >seq89 Length=37195 Score = 111 bits (122), Expect = 2e-19 Identities = 145/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 10874 TCAAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCG 10933 |||||||||||||| ||||| || | |||||| | |||||||| ||||||||||| || Sbjct 6947 TCAAAGCCATCCATTTCAGTTAATAATTGATTAAGTGTTTGTTCTCGTTCATCATTTCCG 7006 Query 10934 GG-CATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGAT 10992 | || ||| | | | ||| ||| ||||| ||||||||||| || ||||| || Sbjct 7007 CCTCCTAT-ACCTGTTCCTCTTTGTCGACCTACGGCATCAATTTCATCAATAAAAACAAT 7065 Query 10993 ACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACC 11052 ||| ||| |||||| || || ||| | ||||| ||||| || || ||||| Sbjct 7066 ACAAGGTGCATTTTCTTTTGCTTTTTTAAATAAATCTCTAACTCTTGATGCTCCTACACC 7125 Query 11053 CACAAACATTTCCACAAA 11070 ||||||||||| ||||| Sbjct 7126 GACAAACATTTCGACAAA 7143 >seq387 Length=288413 Score = 109 bits (120), Expect = 7e-19 Identities = 330/502 (66%), Gaps = 11/502 (2%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || || || || || || || || || |||||| || || |||||||| |||| |||| Sbjct 56255 CCTTCATCCCGTGATATAAGCTCGTTGGAGAAGGTGAGCCCAGGCATGAGCCCCCTCTTC 56314 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 |||| ||| || | || ||||| || ||||| ||||| || |||||||| || ||| Sbjct 56315 TTCATCCAAAACACGGCGCAAAACGACCCCGAAAAGAAAATCCCCTCCACGGCTGCAAAC 56374 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAACCACTTCATCGCCCACTGC 126244 || | ||| | || |||| ||| | | | || |||| | | ||||||| | Sbjct 56375 GCCACGAGCCTTTCCACAAACCCT-GCGTCG--GAGCTAATCCACCTGAGAGCCCACTCC 56431 Query 126245 GCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGAT 126304 ||||||||| | ||||| | | ||| | || |||| | |||| || | Sbjct 56432 GCCTTTTTCCGCACGCACGGAATGCTCTCCACGGCCGCAAACAAAAGTGTCTTCTCCGCA 56491 Query 126305 GGATCTTTGATGTACTTATCTATGAGTTTTGAATATGTTTCGCCGTGGACCATTTC-ATT 126363 || || || || |||| || ||| |||||| |||| ||| || | || || Sbjct 56492 GGGTCGGCTATATATGTATCAATCAGTAGTGAATACATTTCCGAGTGCACGTTCTCCATG 56551 Query 126364 ATGGCACTGATACGCGTAGAAAGAGCGCGCTTCGCTTATCTGTACCTCATCGGCAAAATT 126423 ||| |||| | || || ||| |||||||||| | ||| || || | |||||| Sbjct 56552 GCGGC-CTGAAAGGCATAAAAACAGCGCGCTTCTGGAAGCTGGACGTC-TGTGCAAAAGC 56609 Query 126424 GTTATTGATA---TTCTCAAAAACAATTCCATCGGACCCAGCAAAAAACGCCAGGATATA 126480 | | |||| || || ||||||||||| || || | || ||||| || |||| | Sbjct 56610 GCTC--GATAAGGTTTTCCAAAACAATTCCGTCAGATGCGGCGAAAAAGGCGAGGACACG 56667 Query 126481 CTTTATGAATTTCTGTTCATTCTCGTTCAGGGTCTTCCAGTCGTCAAGATCCTTCGAGAG 126540 | | ||| | |||| || || ||| ||||| |||| ||||||| | ||| Sbjct 56668 AGTCAGGAAGTGGCGTTCGGCGTCCTTGAGGCCATTCCAATCGTGCAGATCCTGCTGGAG 56727 Query 126541 ATCTACCTCCTCCGCAGTCCAA 126562 ||| || ||||| || |||||| Sbjct 56728 ATCAACTTCCTCTGCGGTCCAA 56749 >seq898 Length=425369 Score = 104 bits (114), Expect = 3e-17 Identities = 110/145 (76%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 126065 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCTGGCATGAGACCCCGCTTC 126124 || |||||||| ||||||||||| || |||||| || || ||||| | || |||||| Sbjct 413363 CCTTCGTCACGAGAGATGAGTTCGTTAGAGAAGGTGAGGCCCGGCATCAAGCCACGCTTC 413422 Query 126125 TTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATTCCCTCCACACACGCGAAC 126184 || | ||||||| || ||||| || ||||||||||| || |||||||| || || Sbjct 413423 TTGAGGTAGAAAATGGCGCAAAAAGAGCCCGAGAAGAAAATGCCCTCCACGGCGGCAAAG 413482 Query 126185 GCAAAGAGACGCTCAGCAAAGGAGC 126209 || | ||| ||||| || || |||| Sbjct 413483 GCCACGAGTCGCTCTGCGAACGAGC 413507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597346685632080