Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_010240.1 Length=169794 Score E Sequences producing significant alignments: (Bits) Value seq210 104 3e-17 seq135 100 3e-16 >seq210 Length=341256 Score = 104 bits (114), Expect = 3e-17 Identities = 162/232 (70%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 41980 GACCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAG 42039 |||| || | | ||||||||| | || | || ||||| || || ||||| || | Sbjct 96360 GACCACCGCGAAGACGCAACACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCTG 96419 Query 42040 CCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTG 42099 |||||| || || || || |||||||| |||||||| ||||| ||||||||||||| | Sbjct 96420 ACAGAGTGCGATCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAG 96479 Query 42100 GCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 42159 | | || ||| |||||| ||| || || | |||| | | || | || | Sbjct 96480 GAATGCCCTCTTTGTCCTGGATCTTAGTCTTCACATTCGCGATGTTATCAGAGGCCTCGA 96539 Query 42160 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 42211 | || | || || || || ||||| || ||||| |||||||| |||||||| Sbjct 96540 CCTCAAGAGTAATCGTCTTACCCGTGAGGGTCTTCACAAAGATCTGCATTTT 96591 >seq135 Length=363025 Score = 100 bits (110), Expect = 3e-16 Identities = 139/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 42018 TCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAAT 42077 ||||| || || ||||| || || || ||| | || || ||||||||||||||||| Sbjct 297981 TCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCCTCGAGCTGCTTACCAGCGAAG 298040 Query 42078 ATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCGT 42136 || || | |||||| || | ||| | | |||||||||| ||| | || || || | | Sbjct 298041 ATAAGCCTCTGCTGATCAGGTGGGATACCCTCCTTGTCC-TGAATCTTAGTCTTCACGTT 298099 Query 42137 CGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTAC 42196 | | | ||||| || || || || | |||||||| |||||||| || ||||| || Sbjct 298100 CTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGAC 298159 Query 42197 AAAGATTTGCAT 42208 |||||| ||||| Sbjct 298160 AAAGATCTGCAT 298171 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 41993 ACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTC 42052 ||||| |||||| || | ||| ||||| ||||| |||||||| | || || || | Sbjct 298868 ACGCAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGGCC 298927 Query 42053 GTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTT 42112 ||| || |||||||| |||||||| || | ||||||||||| | || | | ||||| Sbjct 298928 GTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATTCCTTCCTT 298987 Query 42113 GTCCATGATTTTTTGT-TTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGA 42171 |||| ||| | || || || | || | | ||||| || || || || | |||| Sbjct 298988 GTCC-TGAATCTTAGTCTTCACGTTCTCAATGGTGTCCGAAGACTCGACCTCCAGGGTGA 299046 Query 42172 TGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 42208 |||| ||||| || || ||||| || || || ||||| Sbjct 299047 TGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 299083 Score = 93.3 bits (102), Expect = 5e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42017 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 42076 |||||| || || ||||| || | || || || |||| || ||||||||||| ||||| Sbjct 299120 CTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCTTCAAGCTGCTTACCGGCGAA 299179 Query 42077 TATGAGTCGCTGCTGGTCGGCTGGCACGCTCTCCTTGTCCATGATTTTTTGT-TTGAGCG 42135 ||||| | ||||||||| | || | || ||||||||| ||| | || || || | Sbjct 299180 GATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCC-TGAATCTTCGTCTTCACAT 299238 Query 42136 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 42195 || | | ||||| || || || |||| |||||||| || || || || ||||| | Sbjct 299239 TCTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTCTTCCCGGTGAGGGTCTTGA 299298 Query 42196 CAAAGATTTGCAT 42208 | || || ||||| Sbjct 299299 CGAAAATCTGCAT 299311 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 543206512311840