Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq135 123 2e-23 seq210 120 3e-22 >seq135 Length=363025 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || ||||| | || || || || || |||||||| || | || |||||| |||| Sbjct 299099 AAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTC 299158 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 |||||||||||| ||||| | ||||||| ||||||||| || || || ||||| || || Sbjct 299159 TTCAAGCTGCTTACCGGCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTC 299218 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| ||| | || || || || || || | ||| | ||| Sbjct 299219 CTGAATCTTCGTCTTCACATTCTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGT 299278 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| ||||| | || || |||||||| ||||| Sbjct 299279 CTTCCCGGTGAGGGTCTTGACGAAAATCTGCAT 299311 Score = 100 bits (110), Expect = 3e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 64231 AAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTC 64290 ||| || | ||||| || || || ||||| |||||||| || | || ||||| |||| Sbjct 298643 AAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGACCGTC 298702 Query 64291 TTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTC 64350 || ||||||||||| || | || |||| ||||||||| || || || || || || || Sbjct 298703 CTCGAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTC 298762 Query 64351 TTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGT 64410 || || || ||| ||| ||| | || || ||| || || || | || | || Sbjct 298763 CTGAATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGCCTCAACCTCCAGGGTGATAGT 298822 Query 64411 CTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 ||| || ||||| || || || ||||| ||||| Sbjct 298823 CTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 298855 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 64247 GTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGCTTGCCG 64306 || ||||| || |||||||||||||| | | |||||| |||| || |||||||| || Sbjct 298887 GTGGATTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTTCCA 298946 Query 64307 GCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTTTGCTTT 64366 || | || | ||||||||||| || || |||||||| || || || || || ||| Sbjct 298947 GCGAAGATCAAACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGAATCTTAGTCTTC 299006 Query 64367 ACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTCAAAGTT 64426 || ||| | || || | || || || | || | |||||||||||| | || Sbjct 299007 ACGTTCTCAATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTC 299066 Query 64427 TTTACGAAAATTTGCAT 64443 || |||||||| ||||| Sbjct 299067 TTGACGAAAATCTGCAT 299083 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/230 (69%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATC-TG 64274 ||||||||| | | |||||| ||||| | || ||||| || || |||||||| || | Sbjct 298400 ACCGCCGCGAAGGCGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTT 298459 Query 64275 CGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAG 64334 | ||| | || | || || |||||||||||||| | || |||| ||||||||| || | Sbjct 298460 CAACG-TACGTCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGTG 298518 Query 64335 GAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCA 64394 | || || || || || || || || ||| || ||| | || || | || | Sbjct 298519 GGATACCCTCCTTATCCTGAATCTTAGTCTTCACGTTCTCAATAGTGTCCGAAGACTCGA 298578 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 | || | || | |||||||| || | || || || ||||| |||||| Sbjct 298579 CCTCAAGGGTAATTGTCTTGCCTGTTAGCGTCTTGACAAAAATCTGCATT 298628 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATC-TG 64274 ||| ||||| | | |||||| ||||| | || ||||| || || |||||||| || | Sbjct 298172 ACCACCGCGAAGGCGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTT 298231 Query 64275 CGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAG 64334 | ||| | ||| | || || |||||||||||||| | || |||| ||||||||| || | Sbjct 298232 CAACG-TACGCCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGCG 298290 Query 64335 GAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCA 64394 | || || || || || || || || ||| || ||| | || || | || | Sbjct 298291 GGATACCCTCCTTGTCCTGAATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGA 298350 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||||||||| || | || || || || || ||||| Sbjct 298351 CCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 298399 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATC-TG 64274 ||| ||||| | | |||||| ||||| | || ||||| || || |||||||| || | Sbjct 297716 ACCACCGCGTAGACGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTT 297775 Query 64275 CGACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAG 64334 | ||| | ||| | || || |||||||||||||| | || |||| |||||| || || | Sbjct 297776 CAACG-TACGCCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCAGGCG 297834 Query 64335 GAATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCA 64394 | || || || || || || || || ||| || ||| | || || | || | Sbjct 297835 GGATACCCTCCTTGTCCTGAATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGA 297894 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCAT 64443 | || | || | ||||||||| || | || || || || || ||||| Sbjct 297895 CCTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 297943 >seq210 Length=341256 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||| | | | ||| || |||| |||||||| || || |||||||| |||| Sbjct 96361 ACCACCGCGAAGACGCAACACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCTGA 96420 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||||| | || || ||||||||||| || | ||||| ||||||||||||||||| Sbjct 96421 CAGAGTGCGATCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGG 96480 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||| || ||||| || || || || ||| ||| | | | ||||| ||| || || Sbjct 96481 AATGCCCTCTTTGTCCTGGATCTTAGTCTTCACATTCGCGATGTTATCAGAGGCCTCGAC 96540 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || | ||| | ||||| || || | || || || || || |||||||| Sbjct 96541 CTCAAGAGTAATCGTCTTACCCGTGAGGGTCTTCACAAAGATCTGCATTTT 96591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499639016611440