Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq759 237 2e-57 >seq759 Length=98512 Score = 237 bits (262), Expect = 2e-57 Identities = 1001/1554 (64%), Gaps = 54/1554 (3%) Strand=Plus/Plus Query 93887 CCATGGCCACCCCGACCCTGTTCAACGCGGGGACC--CCGGTGCCACAGATGTCTTCGTG 93944 ||||| || | || || || ||||| || || ||| ||| || ||| | || || || Sbjct 47712 CCATG-CCTCGCCAACGCTATTCAATGCAGGCACCTGCCGC--CCCCAGCTATCCTCTTG 47768 Query 93945 TTTCCTGATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTG 94004 ||||| | || | | | |||||||| || |||| |||| |||||| ||| Sbjct 47769 CTTCCTTCTCACTATGACTGAGGACTCCATTGAAGGCATTTATGACACTCTCAAGCGCTG 47828 Query 94005 TGCGACCATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACG-TGC-C 94062 || | ||| || || ||| || || || || | | ||||| || | || ||| | Sbjct 47829 CGCTATCATTTCCAAGGCCGCAGGCGGCATTGGATTGTCTATCCACAACATCCGATGCAC 47888 Query 94063 AGGGGTTCCTACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGG 94122 | | || |||||||| |||||||| || || || ||||| | || |||||||| || Sbjct 47889 AAAG--TCGTACATCCGTGGTACCAACGGTACGTCGAACGGAATTGTGCCTATGCTTCGT 47946 Query 94123 GTCTTCAACAACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTC 94182 |||||||| || | || | || |||||||| ||||| |||| | |||||||| | || Sbjct 47947 GTCTTCAATGACACAGCTAGGTATGTGGACCAAGGTGGCGGGAAGCGGAAGGGTGCATTT 48006 Query 94183 GCGGTCTATCTCGAGCCCTGGCACGCGGACGTGCAGG-CTTTCATCGACCTGCGAAAGAA 94241 || ||||| | ||||| |||||||| || | | | ||||| | || || || ||||| Sbjct 48007 GCTATCTATTTGGAGCCTTGGCACGCAGATATCCTCGACTTTCTT-GATCTTCGCAAGAA 48065 Query 94242 CCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCT 94301 || ||||| || ||||||| | ||||||||||||| || ||| | |||||||| Sbjct 48066 TCATGGCAAGGAAGAACAGAGGGCTCGTGACCTCTTCTACGGCCTATGGATCCCAGACCT 48125 Query 94302 TTTTATGAAACGCGTCGAGAAAAACT--CCGCC--TGGAGTCTTTTTTGTCCCAATGAAT 94357 |||||||| ||||||| || || ||| ||| ||||| ||||| ||||| | Sbjct 48126 CTTTATGAAGCGCGTCG----AAGCTGATGGCCAGTGGTCGCTTTTCTGTCCGAATGAGT 48181 Query 94358 GTCCCGGACTGTCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAAT 94417 || || ||| ||||||| | ||| | |||||||| |||| | ||||| Sbjct 48182 CCCCTGGTCTGGCCGACGTCTATGGCACTGAATTTGAAGAGCTGTACGAAAAGTACGA-- 48239 Query 94418 CGCAGGGCAAGGCC-AGGAAG--GTT--ATGGATGCTAGGAAGCTGTGGGATCAGATCGT 94472 | ||| | |||| || | | ||| ||| || || ||| | ||| || || | Sbjct 48240 -GAAGG--ACGGCCGAGCACGCAGTTCCATGAGCGCGAGAAAGATCTGGTATGCTATTCT 48296 Query 94473 GGACGTACAGGTGGAGACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAA 94532 || | ||| | || || || | || ||||| | | |||||| || ||| || Sbjct 48297 CGAAGCCCAGATTGAAACTGGAAATCCGTACATGCTCTACAAGGATGCTTGTAACCGGAA 48356 Query 94533 GTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGA 94592 | ||||||||| ||||||| ||||| || ||||| ||||| |||||||| || Sbjct 48357 GAGCAACCAGCAAAACCTCGGAACCATCAAATCTTCCAATCTTTGCACAGAGATTGTTGA 48416 Query 94593 GTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTT 94652 ||||||| | ||||| ||| ||||||| || ||| ||| || || ||| || || Sbjct 48417 GTATACTGCCCCGGATGAGGTTGCTGTTTGCAACTTGGCTTCTATTGCCCTCAACAAGTT 48476 Query 94653 CGTGCGAGATGC-CTACACG--TCTACTGCTTCGTTCGATCTGGAGGAGCTTGTGAACTT 94709 || | | | | | | || ||| | || | |||| || | ||| | Sbjct 48477 TGTAATTGTTCCGGAAGATGGTTCCACTCCGTCATATGATCACGAAGCCCTT-----CGC 48531 Query 94710 CGCGGGA--AGGATGGTCTTG---AACCTGAACAGGGTAATCGACAAGAACTTCTACCCC 94764 || | || | |||||| | || || |||| ||||||||| |||||||| || Sbjct 48532 CGTGTGACGAAGATGGTTGCGCGCAATCTTAACAAAGTAATCGACGTCAACTTCTATCCT 48591 Query 94765 GTCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGT 94824 ||| ||| || |||| || ||| || || || || || || ||||| | ||||| Sbjct 48592 ATCCAGGAAGCTAAGAATTCCAACATGCGCCACCGCCCAATTGGTATCGGAATTCAGGGG 48651 Query 94825 TTCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCGGCGGGTTTG 94884 | || ||| | | | | ||||| |||| | || || | || | ||| Sbjct 48652 CTTGCAGACACATTTATTCTCATGCGCATGCCGTTTGAGAGTGAGGGAGCTCGTGAGTTG 48711 Query 94885 AATTTGAACATATTCGAAAGCATTTATTACGGGGCCAT-GAAACAATCCGTCCACT-TGG 94942 ||| | | || ||||||| | | || | | | || | || || | || ||| | Sbjct 48712 AATAAGGATATTTTCGAAACCCTCTACTTCAGCGCTGTAGAGACCAGTTGTGAACTGTCT 48771 Query 94943 CCAGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCGCCCTTGGAACAGGGCATTT 95002 |||| | | || || |||| ||| | || || || || | |||| | Sbjct 48772 TCAGAGCAG-----GGTCCTTACGAGACGTACATTGGTTCCCCGATGTCAAAGGGTCAGT 48826 Query 95003 TTCAGTTCGACCTCTGGGGTGTGAAGCCC---TCGGGTCTGTACGACTGGGAAGCTCTAC 95059 | ||||| ||||| ||||| ||||||||| || || | | |||||||| | || | Sbjct 48827 TCCAGTTTGACCTTTGGGGCGTGAAGCCCACTTCTGGCCGATGGGACTGGGATGGCCTTC 48886 Query 95060 GCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGG 95119 | | | ||| | || ||||| || | ||||| || || || ||||| || | Sbjct 48887 GGGAGAAGGTTCTAAAGAGTGGTGTCCGCAATTCACTGCTCGTTGCTCCAATGCCTACCG 48946 Query 95120 CCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGT 95179 | || || ||||||| || || ||||| |||| ||||| || | ||| || || ||| Sbjct 48947 CTTCAACATCGCAGATTCTCGGTAACAATGAGTGCTTCGAGCCTTACACATCTAATCTGT 49006 Query 95180 ACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACC 95239 ||| | ||||| | | || || ||| | | | |||| ||||| || ||| | Sbjct 49007 ACACACGAAGGGTGTTGTCTGGTGAGTTCTGCATTGTGAACACTCACCTGGTAAAGGATC 49066 Query 95240 TGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCT 95299 | || || |||||| | | | ||||||| | | || || || | Sbjct 49067 TTCAAAAGCTTGGGCTGTGGGATTCTACCATGAAGAACCGCATAGTTGCAGCGAATGGTT 49126 Query 95300 CCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGG 95359 | || || |||||||| |||| || | || ||| || ||||||||||| || |||| Sbjct 49127 CTGTTCAAAACATCCCCGAAATTCCTGCAGATATCCGCGCCCTCTACAAGACTGTCTGGG 49186 Query 95360 AGATCCCGCAG-CGCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATC 95412 | ||| ||| |||| || || || | ||| || | ||| || ||| |||| Sbjct 49187 AAATCAGCCAGAAGCGT-ATTCTTGATCTCGCCGCTGACCGGGGTGCCTACATC 49239 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494717473578960