Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq135 129 6e-25 seq759 93.3 4e-14 >seq135 Length=363025 Score = 129 bits (142), Expect = 6e-25 Identities = 167/231 (72%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | |||| |||||| || | || || || || ||||| ||||||||| Sbjct 298857 CCACCACGAAGACGCAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCGGAA 298916 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||||| || || ||||| ||||||||| ||||||| |||||||| || || || Sbjct 298917 AGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGG 298976 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || || ||||||||| || || ||| | | || | |||||||| | |||||| Sbjct 298977 ATTCCTTCCTTGTCCTGAATCTTAGTCTTCACGTTCTCAATGGTGTCCGAAGACTCGACC 299036 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGGCT 127117 || | ||| | || |||||||| || || || || |||||||||||| || Sbjct 299037 TCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCATGCCT 299087 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||||| || | ||||| ||| | ||||| || || || || ||||| ||| | Sbjct 297717 CCACCGCGTAGACGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTC 297776 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || ||| || ||||| || || ||| |||| | | ||||||||| || || Sbjct 297777 AACGTACGCCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCAGGCGGG 297836 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| || || ||| | | |||| |||||||| | |||||| Sbjct 297837 ATACCCTCCTTGTCCTGAATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGACC 297896 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| || || || || ||||| |||||||| Sbjct 297897 TCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 297943 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| ||| | ||||| || || || || ||||| ||| | Sbjct 297945 CCACCGCGAAGGCGAAGCACCAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGTTC 298004 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || ||| || ||||| || |||||| |||| | | ||||||||| || || Sbjct 298005 AACGTACGCCCATCCTCGAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGATCAGGTGGG 298064 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| || || ||| | | |||| |||||||| | |||||| Sbjct 298065 ATACCCTCCTTGTCCTGAATCTTAGTCTTCACGTTCTCGATGGTGTCCGAAGACTCGACC 298124 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| || || || || ||||| |||||||| Sbjct 298125 TCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 298171 Score = 113 bits (124), Expect = 4e-20 Identities = 161/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 |||||||| | || | ||||| ||| | ||||| || || || || ||||| ||| | Sbjct 298173 CCACCGCGAAGGCGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTC 298232 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || ||| || ||||| || || ||| |||| | | |||||| || || || Sbjct 298233 AACGTACGCCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGCGGG 298292 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||||||| || || ||| | | |||| |||||||| | |||||| Sbjct 298293 ATACCCTCCTTGTCCTGAATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGACC 298352 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| || || || || ||||| |||||||| Sbjct 298353 TCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 298399 Score = 102 bits (112), Expect = 8e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 126905 ACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCT 126964 |||||||| | |||||||| ||||| || ||||| || | |||||| || || Sbjct 298647 ACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGACCGTCCTCG 298706 Query 126965 AGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTG 127024 ||||| || |||||| |||| | | |||||| || || || ||||||||||||||| Sbjct 298707 AGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGA 298766 Query 127025 ATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTG 127084 || ||| ||| | | || | ||||||| ||| || || | ||| | || || Sbjct 298767 ATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGCCTCAACCTCCAGGGTGATAGTCTTT 298826 Query 127085 CCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || |||| || || |||||||||||||| Sbjct 298827 CCAGTCAAGGTCTTGACAAAAATCTGCAT 298855 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 || ||||| | || | ||||| ||| | ||||| || || || || ||||| ||| | Sbjct 298401 CCGCCGCGAAGGCGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTC 298460 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | ||| || ||| || ||||| || || ||| |||| | | |||||| || || || Sbjct 298461 AACGTACGTCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGTGGG 298520 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACT 127066 || |||||||| ||| || || ||| | | || | ||||||| | |||||| Sbjct 298521 ATACCCTCCTTATCCTGAATCTTAGTCTTCACGTTCTCAATAGTGTCCGAAGACTCGACC 298580 Query 127067 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 || | ||| | || ||||| || || || || |||||||||||||| Sbjct 298581 TCAAGGGTAATTGTCTTGCCTGTTAGCGTCTTGACAAAAATCTGCAT 298627 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 |||||||| || || || ||||| ||| | ||||| || || ||||| || || Sbjct 299115 GTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCTTCAAGCTGCTTACCG 299174 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 ||| |||| | | |||||| || || || ||||| ||||||||| || ||| ||| Sbjct 299175 GCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGAATCTTCGTCTTC 299234 Query 127037 AGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTT 127096 | | |||| |||||||| |||||| |||| || | || || ||||| || || Sbjct 299235 ACATTCTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTCTTCCCGGTGAGGGTC 299294 Query 127097 TTTACAAAAATCTGCATG 127114 || || |||||||||||| Sbjct 299295 TTGACGAAAATCTGCATG 299312 >seq759 Length=98512 Score = 93.3 bits (102), Expect = 4e-14 Identities = 366/568 (64%), Gaps = 26/568 (5%) Strand=Plus/Minus Query 146445 AAAGGCGTCGGCGAGACCCTGTATCCCGACACCAACGGGGCGGTGTTTCTTGTTACTGTT 146504 ||| | ||| || || ||||| || |||| ||||| |||||||| | |||| || Sbjct 48666 AAATGTGTCTGCAAGCCCCTGAATTCCGATACCAATTGGGCGGTGGCGCATGTTGGAATT 48607 Query 146505 CGCAGCGCCCGCAGTGGGATAGTGGTTGCTGTCGATGATCTTGTTGAGATTACGCACGAC 146564 | ||| || | |||||| |||| |||||| | ||||| ||||| ||| | || Sbjct 48606 CTTAGCTTCCTGGATAGGATAGAAGTTGACGTCGATTACTTTGTTAAGATTGCGCGCAAC 48547 Query 146565 AATTTTCGTCAAACGATTCAGCAGGACATAGT---CAAATGTTTTAGTT--------TT- 146612 || ||||||| ||| | ||| | | || || ||| ||| || Sbjct 48546 CATCTTCGTCACACGGC---GAAGGGCTTCGTGATCATATGACGGAGTGGAACCATCTTC 48490 Query 146613 ---AACGTTGACGCACTTGTTGACGGCGATAGAGGCCAAGTTACATACGGCAGTCTCGTC 146669 ||| | || ||||||||| ||| ||||| |||||||| || || ||| ||| || Sbjct 48489 CGGAACAATTACAAACTTGTTGAGGGCAATAGAAGCCAAGTTGCAAACAGCAACCTCATC 48430 Query 146670 CTTGTCGCAATACTGCACAATCTCGGCGCAGAGGTTGCTGCACTTGATGATGCCCAAAtt 146729 | | | ||||| |||||||| | ||| || ||| | |||||| | || | || Sbjct 48429 CGGGGCAGTATACTCAACAATCTCTGTGCAAAGATTGGAAGATTTGATGGTTCCGAGGTT 48370 Query 146730 tttttGGTTACTAAACTTGTTGCAGGGGTCCTTGTAGAGCATGTACGGTCCCCCGGTTTC 146789 || ||||| || | ||| || | |||||||||||||||||||| || ||||| Sbjct 48369 TTGCTGGTTGCTCTTCCGGTTACAAGCATCCTTGTAGAGCATGTACGGATTTCCAGTTTC 48310 Query 146790 GACATTGGTCTCGACGATGAATCTAAACAAATC--TCTGGCCTTTACTTGTCTTTCGTAC 146847 | | || |||| || | | | || ||| ||| || | | | | | ||| | Sbjct 48309 AATCTGGGCTTCGAGAAT--AGCATACCAGATCTTTCTCGCGCTCA-TGGAACTGCGTGC 48253 Query 146848 -AGTTTATTCTTTTCGTATTTCTCGTACAATATTTCAAAACTAGAACCGTACTCGTCGAG 146906 | | ||| ||||| || ||||||| |||||| || || || ||||| Sbjct 48252 TCGGCCGTCCTTCTCGTACTTTTCGTACAGCTCTTCAAATTCAGTGCCATAGACGTCGGC 48193 Query 146907 GAGGCCGGGATACTTTTTGGGACAGAACAGCGACCATTCTTTATTCTCCTTC-ACGCGTT 146965 || || || ||| || |||||||| |||||||| | | || |||| ||||| | Sbjct 48192 CAGACCAGGGGACTCATTCGGACAGAAAAGCGACCACTGGCCA-TCAGCTTCGACGCGCT 48134 Query 146966 CCATAAACAAATCGGGAATCCAAAGGCC 146993 |||||| | || || ||||| ||||| Sbjct 48133 TCATAAAGAGGTCTGGGATCCATAGGCC 48106 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475495296078240