Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq759 113 4e-20 seq135 98.7 9e-16 >seq759 Length=98512 Score = 113 bits (124), Expect = 4e-20 Identities = 347/529 (66%), Gaps = 11/529 (2%) Strand=Plus/Plus Query 123237 ATGCTGCGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC---AAACGCAAA 123293 ||||| || || | |||| || | | || | || ||||| || ||| || || || Sbjct 47938 ATGCTTCGTGTCTTCAATGACACAGCTAGGTATGTGGACCAAGGTGGCGGGAAGCGGAAG 47997 Query 123294 GGCGCGATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAAT-TT 123352 || || | || |||||| | || || ||||||| ||| | ||| ||| | || || Sbjct 47998 GGTGCATTTGCTATCTATTTGGAGCCTTGGCACGCAGATATCCTCGACTTTCTTGATCTT 48057 Query 123353 AAAACGCAACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGT 123412 | | | ||||| ||||||| ||| || || || | || |||| ||||| | Sbjct 48058 CGCAAGAATCATGGCAA-GGAAGAACAGAGGGCTCGTGACCTCTTCTACGGCCTATGGAT 48116 Query 123413 ACCCGATTTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGA 123472 || || | |||||| ||||| ||| || ||| ||||||||| | ||||| | Sbjct 48117 CCCAGACCTCTTTATGAAGCGCGTCGAAGCTGATGGCCAGTGGTCGCTTTTCTGTCCGAA 48176 Query 123473 TCGGTGTCCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATA 123532 | || || || || |||||| || |||| | | ||||| ||| |||||| | || Sbjct 48177 TGAGTCCCCTGGTCTGGCCGACGTCTATGGCACTGAATTTGAAGAGCTGTACGAAAAGTA 48236 Query 123533 CGAGCGCGAAGGCAAA-CAGGTTAGT--CAGGTTCCGGCACGTGATTTGTTCAAATTTAT 123589 |||| || ||| | || | ||| || | | | ||| || | | ||| Sbjct 48237 CGAGAAGGACGGCCGAGCACGC-AGTTCCATGAGCGCGAGAAAGATCTGGT--ATGCTAT 48293 Query 123590 TATCGAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAG 123649 | ||||| | || | ||||| |||| ||||||||||||||||| || || || ||| | Sbjct 48294 TCTCGAAGCCCAGATTGAAACTGGAAATCCGTACATGCTCTACAAGGATGCTTGTAACCG 48353 Query 123650 GAAAACCAATCAGAGCAACTTGGGAACAATAAAATGTAGTAATCTTTGCTCCGAAATTAT 123709 ||| | ||| ||| ||| | ||||| || |||| | ||||||||| | || ||| | Sbjct 48354 GAAGAGCAACCAGCAAAACCTCGGAACCATCAAATCTTCCAATCTTTGCACAGAGATTGT 48413 Query 123710 CGAATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGATT 123758 || || | | | ||| | || || || || || |||||||| ||| Sbjct 48414 TGAGTATACTGCCCCGGATGAGGTTGCTGTTTGCAACTTGGCTTCTATT 48462 >seq135 Length=363025 Score = 98.7 bits (108), Expect = 9e-16 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || || || | || ||| | || || || |||||||| || || || |||||| Sbjct 298854 ATACCACCACGAAGACGCAGCACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCG 298913 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| || || | || ||||| ||| | ||||| || |||||||| ||| Sbjct 298914 GAAAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGC 298973 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || ||||| || || ||||| || || | || | || | |||||| |||||||| Sbjct 298974 GGGATTCCTTCCTTGTCCTGAATCTTAGTCTTCA-CGTTCTCAATGGTGTCCGAAGACTC 299032 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || | || |||||||| || || || || ||||| ||||| Sbjct 299033 GACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACGAAAATCTGCAT 299083 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | ||| ||||| || || |||||||| ||||| || || ||| Sbjct 298398 ATACCGCCGCGAAGGCGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCG 298457 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | | || ||| || | || || || ||| | || | | |||||||| || Sbjct 298458 TTCAACGTACGTCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGT 298517 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || ||||| ||||| || || | || | || | ||||| |||||||| Sbjct 298518 GGGATACCCTCCTTATCCTGAATCTTAGTCTTCA-CGTTCTCAATAGTGTCCGAAGACTC 298576 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || |||| || ||||| ||||| || || |||||||| ||||| Sbjct 298577 GACCTCAAGGGTAATTGTCTTGCCTGTTAGCGTCTTGACAAAAATCTGCAT 298627 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | ||| ||||| || || |||||||| ||||| || || ||| Sbjct 298170 ATACCACCGCGAAGGCGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCG 298229 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | | || ||| || | || || || ||| | || | | |||||||| ||| Sbjct 298230 TTCAACGTACGCCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGC 298289 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || || ||||| || || | | || | || | |||||| |||||||| Sbjct 298290 GGGATACCCTCCTTGTCCTGAATCTTA-GTCTTAACGTTCTCGATGGTGTCCGAAGACTC 298348 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || | || ||||| || || || || ||||| || ||||| Sbjct 298349 GACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 298399 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | ||| ||||| || || |||||||| ||||| || || ||| Sbjct 297714 ATACCACCGCGTAGACGAAGCACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCG 297773 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | | || ||| || | || || || ||| | || | | ||||| || ||| Sbjct 297774 TTCAACGTACGCCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCAGGC 297833 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || || ||||| || || | | || | || | |||||| |||||||| Sbjct 297834 GGGATACCCTCCTTGTCCTGAATCTTA-GTCTTAACGTTCTCGATGGTGTCCGAAGACTC 297892 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| || || || | || ||||| || || || || ||||| || ||||| Sbjct 297893 GACCTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGCAT 297943 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451997968062960