Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq759 179 5e-40 seq524 125 9e-24 seq926 102 1e-16 seq89 102 1e-16 seq898 100 3e-16 >seq759 Length=98512 Score = 179 bits (198), Expect = 5e-40 Identities = 457/686 (67%), Gaps = 21/686 (3%) Strand=Plus/Minus Query 116428 AGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATT 116487 ||||| || || |||| || || |||| ||||||| |||| ||||| | ||| Sbjct 48467 AGGGCAATAGAAGCCAAGTTGCAAACAGCAACCTCATCCGGGGCAGTATACTCAACAATC 48408 Query 116488 TCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTA 116547 || || || | ||| ||| || ||||| || | ||| | || || ||| |||| Sbjct 48407 TCTGTGCAAAGATTGGAAGATTTGATGGTTCCGAGGTTTTGCTGGTTGCTCTTCCGGTTA 48348 Query 116548 CACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCC 116607 || ||||||||||||||||| || || | || || || | |||| | ||||||||| Sbjct 48347 CAAGCATCCTTGTAGAGCATGTACGGATTTCCAGTTTCAATCTGGGCTTCGAGAATAGCA 48288 Query 116608 TTCCATACAT----CG-GCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACT 116662 | ||| | | || || ||| || | ||| ||||| || |||| |||||||| Sbjct 48287 TACCAGATCTTTCTCGCGCTCATGGAACTG---CGT--GCTCGGCCGTCCTTCTCGTACT 48233 Query 116663 TTGTGTAGAGGGCCTCAAACTCTTCAC--CCACAGCC-TCTGAGAGCCCTGGTGCCTTAT 116719 || ||| || | ||||| |||| ||| || | || | || || || | || || Sbjct 48232 TTTCGTACAGCTCTTCAAA---TTCAGTGCCATAGACGTCGGCCAGACCAGGGGACTCAT 48176 Query 116720 CTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGA 116779 |||||||| || ||||| || ||| | | || || |||||||| ||||||||||||| Sbjct 48175 TCGGACAGAAAAGCGACCACTGGCCATCAGCTTCGACGCGCTTCATAAAGAGGTCTGGGA 48116 Query 116780 TCCAGAGCGCCG-AGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGC 116838 |||| || |||| ||||||| || ||| | |||||| | || ||||| || Sbjct 48115 TCCATAG-GCCGTAGAAGAGGTCACGAGCCCTCTGTTCTTCCTTGCCATGATTCTTGCGA 48057 Query 116839 AACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCC 116898 | || | |||||| | |||||| |||||||| || |||| || | || | || ||| Sbjct 48056 AGATCAAGAAAGTCGAGGATATCTGCGTGCCAAGGCTCCAAATAGATAGCAAATGCACCC 47997 Query 116899 TTGCG---ACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATT 116955 || || | ||| | |||| |||||||| || || | || || || |||||||| Sbjct 47996 TTCCGCTTCCCGCCACCTTGGTCCACATACCTAGCTGTGTCATTGAAGACACGAAGCATA 47937 Query 116956 GGAATGATACCATCAGATTGGCCATTTGTCCCCCGAATACGAGACTTGTTGGCTCTGACA 117015 || | || || | || || || || || || || ||||| || || || Sbjct 47936 GGCACAATTCCGTTCGACGTACCGTTGGTACCACGGATGTACGACTTTGTGCATCGGATG 47877 Query 117016 TCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGA 117075 | |||||| || ||||| || ||||| ||| || || ||||| | ||||| Sbjct 47876 TTGTGGATAGACAATCCAATGCCGCCTGCGGCCTTGGAAATGATAGCGCAGCGCTTGAGA 47817 Query 117076 CTGCCGTAGATCCCATCGATCGAGTC 117101 || | || || || || || ||||| Sbjct 47816 GTGTCATAAATGCCTTCAATGGAGTC 47791 >seq524 Length=236013 Score = 125 bits (138), Expect = 9e-24 Identities = 335/504 (66%), Gaps = 21/504 (4%) Strand=Plus/Minus Query 12702 CGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTTCGTCGCC 12761 || ||||||||||| || | || | || | |||||| | |||| | |||||| || Sbjct 46051 CGGTCAAAGCGACCCGGTCTCAGCAACGCCTGGTCAAGCACATCAGCTCTGTTCGTGGCA 45992 Query 12762 GCGATGACAACGATGCCCGTCTCGTTA---TCGAAGCCATCCATCTCAGTCAAGAGTTGA 12818 |||||||| | || || | |||| || |||||||||||||| || | | ||| Sbjct 45991 GCGATGACGATGACACCAGA---GTTACCCTCAAAGCCATCCATCTCCGTGAGCATTTGG 45935 Query 12819 TTGATGGTTTGTTCACGTTCATCATT--CGCGGGCATACCACCCGCACTGCGTTGCTTAC 12876 |||| || || ||||| ||||| || | | || | || |||| | || | | Sbjct 45934 TTGAGCGTCTGCTCACGCTCATCGTTACCACCAGC--AATTCCGGCACCCCTCTGTCTGC 45877 Query 12877 CGACGGCGTCAATTTCGTCAATGAAAACGATACACG----GTTGATTTTCACGGGCAACT 12932 ||||||| ||||| || |||||||||| ||| || | ||| |||| ||| Sbjct 45876 CGACGGCATCAATCTCATCAATGAAAATGATGCATGGGGCGTTCTTTTT----GGCGTTC 45821 Query 12933 TCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCG 12992 |||| | || ||||| | ||||| ||||| || |||||||||||||| | | Sbjct 45820 GCAAACAGGTCACGCACGCGAGACGCACCAACACCGACGAACATCTCCACAAACTCAGAC 45761 Query 12993 GCGGAACATTG-GATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGCGAGGAGGGT 13051 ||| | || | || ||| ||||| | || || |||| || || ||||| ||||| Sbjct 45760 CCGG-AGATGGAGAAGAACGGGACACCAGCCTCGCCGGCGACAGCGCGAGCGAGTAGGGT 45702 Query 13052 CTTCCCCGTCCCTGGTTTCCCCGCGAGAAGGGCACCACGTGGGATCCTGGCACCACTTCC 13111 ||| || || || || ||| |||| | | |||| || |||||||| || ||| | Sbjct 45701 CTTACCAGTTCCGGGGGGTCCCTCGAGGATGACACCGCGCGGGATCCTAGCGCCAAGCTC 45642 Query 13112 AAAGTAGCGCTCGGGTTGTTTAAGAAAGTCCACGATTTCTTCCAATTCATCCTTCGCGGC 13171 | | ||||||| | || || || || | |||| || | | || ||| ||| | Sbjct 45641 AGTGAAGCGCTCCGATTCCTTGAGGAACTGGACGACCTCCTGGAGCTCGAGCTTGGCGCC 45582 Query 13172 GTCGATGCCTTCAACGTCACTGAA 13195 ||||| ||| | ||||| ||||| Sbjct 45581 GTCGACGCCAGCGACGTC-CTGAA 45559 >seq926 Length=180086 Score = 102 bits (112), Expect = 1e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848 || ||||||||||| ||||| || | |||||| | |||||||| ||||||||||| || Sbjct 62218 TCAAAGCCATCCATTTCAGTTAATAATTGATTAAGTGTTTGTTCTCGTTCATCATTTCCG 62277 Query 12849 -GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGAT 12907 | || ||| | | | ||| ||| ||||| |||||||| ||||| ||||| || Sbjct 62278 CCTCCTA-TACCTGTTCCTCTTTGTCGACCTACGGCATCAATTTCATCAATAAAAACAAT 62336 Query 12908 ACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 ||| ||| |||||| || || ||| | ||||| ||||| || || ||||| Sbjct 62337 ACAAGGTGCATTTTCTTTTGCTTTTTTAAATAAATCTCTAACTCTTGATGCTCCTACACC 62396 Query 12968 CACAAACATCTCCACAAA 12985 |||||||| || ||||| Sbjct 62397 GACAAACATTTCGACAAA 62414 >seq89 Length=37195 Score = 102 bits (112), Expect = 1e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 12789 TCGAAGCCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCACGTTCATCATTCGCG 12848 || ||||||||||| ||||| || | |||||| | |||||||| ||||||||||| || Sbjct 6947 TCAAAGCCATCCATTTCAGTTAATAATTGATTAAGTGTTTGTTCTCGTTCATCATTTCCG 7006 Query 12849 -GGCATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCGTCAATGAAAACGAT 12907 | || ||| | | | ||| ||| ||||| |||||||| ||||| ||||| || Sbjct 7007 CCTCCTA-TACCTGTTCCTCTTTGTCGACCTACGGCATCAATTTCATCAATAAAAACAAT 7065 Query 12908 ACACGGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACC 12967 ||| ||| |||||| || || ||| | ||||| ||||| || || ||||| Sbjct 7066 ACAAGGTGCATTTTCTTTTGCTTTTTTAAATAAATCTCTAACTCTTGATGCTCCTACACC 7125 Query 12968 CACAAACATCTCCACAAA 12985 |||||||| || ||||| Sbjct 7126 GACAAACATTTCGACAAA 7143 >seq898 Length=425369 Score = 100 bits (110), Expect = 3e-16 Identities = 109/145 (75%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 127538 CCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTC 127597 || |||||||| ||||||||||| || |||||| || || ||||| | || |||||| Sbjct 413363 CCTTCGTCACGAGAGATGAGTTCGTTAGAGAAGGTGAGGCCCGGCATCAAGCCACGCTTC 413422 Query 127598 TTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAAC 127657 || | ||||||| || ||||| ||||| |||||||| || |||||||| || || Sbjct 413423 TTGAGGTAGAAAATGGCGCAAAAAGAGCCCGAGAAGAAAATGCCCTCCACGGCGGCAAAG 413482 Query 127658 GCAAATAGACGCTCGGCAAAGGAGC 127682 || | || ||||| || || |||| Sbjct 413483 GCCACGAGTCGCTCTGCGAACGAGC 413507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613500098654160