Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq387 129 9e-25 seq898 107 3e-18 >seq387 Length=288413 Score = 129 bits (142), Expect = 9e-25 Identities = 230/327 (70%), Gaps = 9/327 (3%) Strand=Plus/Plus Query 159932 TCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATG 159991 || || |||| || || ||||| || || | ||||||||| | | |||| || |||||| Sbjct 56243 TCACAATGCAACCCTTCATCCCGTGATATAAGCTCGTTGGAGAAGGTGAGCCCAGGCATG 56302 Query 159992 ATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAA-AAGATCCCCTC 160050 | ||| | | || | |||||| | ||| |||||| ||| | |||| || |||||||| Sbjct 56303 AGCCCCCTCTTCTTCATCCAAAACACGGC-GCAAAACGACCCCGAAAAGAAAATCCCCTC 56361 Query 160051 CACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCATGGGTCCACCT 160110 |||||| ||||||||||||||||| || |||| |||| || | | ||||||| Sbjct 56362 CACGGCTGCAAACGCCACGAGCCTTTCCACAAACCCTGCGTCGGAGCTA---ATCCACCT 56418 Query 160111 TTTGGCCCATTCAGCCTTCTTTGCG-ATGCACGGCATGCGCTCGACGGCGTTAAAC-AAT 160168 ||||| || ||||| ||| || | |||||| |||| ||| ||||| |||| || Sbjct 56419 GAGAGCCCACTCCGCCTT-TTTCCGCACGCACGGAATGCTCTCCACGGCCGCAAACAAAA 56477 Query 160169 CTGTCCTGCTCCTTCACATCCTTGATCAGAGTAGCAATCAGCTTCGAGTACATTTCTGCG 160228 ||| || |||| || || ||| ||||||| || |||||||| | | Sbjct 56478 GTGT-CTTCTCCGCAGGGTCGGCTATATATGTATCAATCAGTAGTGAATACATTTCCGAG 56536 Query 160229 TGCACATTTTCGATGGCCATCTGAAAG 160255 ||||| || || ||||| ||||||| Sbjct 56537 TGCACGTTCTCCATGGCGGCCTGAAAG 56563 >seq898 Length=425369 Score = 107 bits (118), Expect = 3e-18 Identities = 114/148 (77%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 159931 GTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCAT 159990 |||||| |||| || ||||| |||||||||| ||||| || | | ||||||||||||| Sbjct 413350 GTCGCAATGCAACCCTTCGTCACGAGAGATGAGTTCGTTAGAGAAGGTGAGGCCCGGCAT 413409 Query 159991 GATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTA-AAAAAGATCCCCT 160049 | |||||| ||||| | ||||||| ||||||| | | | | || || || |||| Sbjct 413410 CAAGCCACGCTTCTTGAGGTAGAAAATGG-CGCAAAAAGAGCCCGAGAAGAAAATGCCCT 413468 Query 160050 CCACGGCCGCAAACGCCACGAGCCTCTC 160077 ||||||| ||||| |||||||| | ||| Sbjct 413469 CCACGGCGGCAAAGGCCACGAGTCGCTC 413496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795145996078560