Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq135 131 2e-25 seq210 125 8e-24 >seq135 Length=363025 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | ||| | |||| ||| | ||| |||||||||||| |||||||| || Sbjct 298629 CCTCCACGGAGACGAAGAACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAG 298688 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 |||||||| |||| |||||||||||||| ||||| || | | ||||||||| | ||| Sbjct 298689 AGAGTGCGACCGTCCTCGAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGCGGG 298748 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | || |||||||||| |||||| |||| | || | | ||||| | || || Sbjct 298749 ATGCCCTCCTTGTCCTGAATCTTCGTCTTCACATTCTCAATAGTGTCCGAGGCCTCAACC 298808 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||| || || || |||| || || ||||| || ||||| Sbjct 298809 TCCAGGGTGATAGTCTTTCCAGTCAAGGTCTTGACAAAAATCTGCAT 298855 Score = 127 bits (140), Expect = 2e-24 Identities = 174/242 (72%), Gaps = 1/242 (0%) Strand=Plus/Plus Query 46353 TACTA-TATTATTTGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGG 46411 ||||| | ||| | || || | || ||| | ||||||||| | ||| ||||| ||| Sbjct 297702 TACTACTCTTACATACCACCGCGTAGACGAAGCACCAGATGGAGGGTAGATTCCTTCTGG 297761 Query 46412 ATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGC 46471 || ||||||||| | || ||| | || |||||||||||||||||||| || | | | Sbjct 297762 ATGTTGTAGTCGTTCAACGTACGCCCATCCTCGAGCTGCTTGCCGGCGAAGATAAGCCTC 297821 Query 46472 TGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTG 46531 ||||| || | ||| | | |||||||||| ||||| |||| | || | | ||| Sbjct 297822 TGCTGATCAGGCGGGATACCCTCCTTGTCCTGAATCTTAGTCTTAACGTTCTCGATGGTG 297881 Query 46532 TCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGC 46591 || || || || |||| |||||||| |||||||| || || || |||||||| ||| Sbjct 297882 TCCGAAGACTCGACCTCCAGGGTGATGGTCTTGCCCGTGAGGGTCTTGACAAAGATCTGC 297941 Query 46592 AT 46593 || Sbjct 297942 AT 297943 Score = 122 bits (134), Expect = 1e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||| | ||| ||||| ||||| ||||||||| | || ||| | || || Sbjct 298190 CACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCCTC 298249 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||||||||| || | | ||||||||| | ||| | | |||||||||| Sbjct 298250 GAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTG 298309 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| |||| | || | | ||||| || || || || | |||||||| || Sbjct 298310 AATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTT 298369 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || || || |||||||| ||||| Sbjct 298370 GCCCGTGAGGGTCTTGACAAAGATCTGCAT 298399 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||| | || ||||| | ||| |||||| ||||| |||||||||| Sbjct 299083 TGCCTCCACGAAGACGAAGGACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGG 299142 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| |||| || |||||||| |||||||| || | | ||||||||| | | Sbjct 299143 AGAGGGTGCGTCCGTCTTCAAGCTGCTTACCGGCGAAGATGAGCCTCTGCTGGTCAGGGG 299202 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | || ||||||||| |||||| |||| | || | | ||||| || || | Sbjct 299203 GGATGCCTTCCTTGTCCTGAATCTTCGTCTTCACATTCTCGATGGTGTCCGAGGACTCGA 299262 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | || | |||||||| || || || || || || || || || ||||| Sbjct 299263 CCTCGAGAGTGATGGTCTTCCCGGTGAGGGTCTTGACGAAAATCTGCAT 299311 Score = 114 bits (126), Expect = 1e-20 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || || ||||| ||||| || ||||| |||| ||||||||||| || ||||| Sbjct 298893 TCCTTCTGAATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCGAGCTGCTTTCCAGCGAAG 298952 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| ||||||||||| | ||| | | ||||||||| ||||| |||| | || Sbjct 298953 ATCAAACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGAATCTTAGTCTTCACGTTC 299012 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| || || || |||| |||||||| ||||| || || || || || Sbjct 299013 TCAATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTGCCGGTGAGGGTCTTGACG 299072 Query 46583 AAGATTTGCAT 46593 || || ||||| Sbjct 299073 AAAATCTGCAT 299083 Score = 109 bits (120), Expect = 6e-19 Identities = 150/210 (71%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||| | ||| ||||| ||||| ||||||||| | || ||| | || || Sbjct 297962 CACCAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCCTC 298021 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 ||||||||| || ||||| || | | |||||| || | || | | |||||||||| Sbjct 298022 GAGCTGCTTACCAGCGAAGATAAGCCTCTGCTGATCAGGTGGGATACCCTCCTTGTCCTG 298081 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| |||| | || | | ||||| || || || |||| |||||||| || Sbjct 298082 AATCTTAGTCTTCACGTTCTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTT 298141 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||||| || || || |||||||| ||||| Sbjct 298142 GCCCGTGAGGGTCTTGACAAAGATCTGCAT 298171 Score = 96.9 bits (106), Expect = 4e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 46384 CACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTC 46443 ||||||||| | ||| ||||| ||||| ||||||||| | || || | || || Sbjct 298418 CACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGTCCATCCTC 298477 Query 46444 GAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCAT 46503 |||||||||||||||||| || | | ||||||||| | || | | |||||| ||| Sbjct 298478 GAGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGTGGGATACCCTCCTTATCCTG 298537 Query 46504 GATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTT 46563 ||||| |||| | || | | ||||| || || || || | || || || || Sbjct 298538 AATCTTAGTCTTCACGTTCTCAATAGTGTCCGAAGACTCGACCTCAAGGGTAATTGTCTT 298597 Query 46564 GCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 ||| || ||||| || ||||| || |||||| Sbjct 298598 GCCTGTTAGCGTCTTGACAAAAATCTGCATT 298628 >seq210 Length=341256 Score = 125 bits (138), Expect = 8e-24 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 46378 ACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTC 46437 ||||||||| || || | || ||||| ||||| |||||||| || |||||||| || Sbjct 96373 ACGCAACACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCTGACAGAGTGCGATC 96432 Query 46438 GTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTT 46497 || |||||||||||||| ||||| || | ||||||||||||| || | || ||| || Sbjct 96433 ATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATGCCCTCTTT 96492 Query 46498 GTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGAT 46557 |||| |||||| |||| | |||| | | || | || || || | || || Sbjct 96493 GTCCTGGATCTTAGTCTTCACATTCGCGATGTTATCAGAGGCCTCGACCTCAAGAGTAAT 96552 Query 46558 GGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || || ||||| || || || |||||||| |||||||| Sbjct 96553 CGTCTTACCCGTGAGGGTCTTCACAAAGATCTGCATTTT 96591 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565231857365520