Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq387 181 1e-40 seq210 140 3e-28 seq135 134 1e-26 seq898 132 5e-26 >seq387 Length=288413 Score = 181 bits (200), Expect = 1e-40 Identities = 363/527 (69%), Gaps = 17/527 (3%) Strand=Plus/Plus Query 132904 TCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATG 132963 || |||||||| || || |||| || || || |||||| ||| || | || |||||| Sbjct 56243 TCACAATGCAACCCTTCATCCCGTGATATAAGCTCGTTGGAGAAGGTGAGCCCAGGCATG 56302 Query 132964 AGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC-GAAAAGAAGACGCCCTC 133022 || || | || || | |||||| | |||| | |||| ||| |||||||| | ||||| Sbjct 56303 AGCCCCCTCTTCTTCATCCAAAACACGGCG-CAAAACGACCCCGAAAAGAAAATCCCCTC 56361 Query 133023 GACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCG 133082 ||||| || || ||||| || | || | ||| || || ||| ||||| | Sbjct 56362 CACGGCTGCAAACGCCACGAGCCTTTCCACAAACCCTGCGTCGGAGCTA---ATCCACCT 56418 Query 133083 CAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACG 133142 || ||||| || ||||||| |||||||| || | || | ||| |||||| Sbjct 56419 GAGAGCCCACTCCGCCTTTTTCCGCACGCACGGAATGCTCTCCACGGCCGCAAACAAA-- 56476 Query 133143 GAGTTTCTCTTCCG-AGGAACGC--ACGTAGGTGTCGATGAGGGTCGAATACATTTCCGA 133199 ||| ||| |||| ||| || | || || || || || |||||||||||||| Sbjct 56477 -AGTGTCTTCTCCGCAGGGTCGGCTATATATGTATCAATCAGTAGTGAATACATTTCCGA 56535 Query 133200 GTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCAC 133259 ||| ||||||||||||||| |||||| | ||||| || ||||| || | ||| || Sbjct 56536 GTGCACGTTCTCCATGGCGGCCTGAAAGGCATAAAAACAGCGCGCTTCTGGAAGCTGGAC 56595 Query 133260 TTCTTGAGCGAAA-CGCTCGACCAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAA 133318 || || || ||| ||||||| || ||||| || || ||||| |||||||||| Sbjct 56596 GTC-TGTGCAAAAGCGCTCGATAAGGTTTTCCAAAACAATTCCGTCAGATGCGGCGAAAA 56654 Query 133319 AGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCG 133378 |||| || || | | | ||| ||||| ||| ||| || | || | ||| ||| || Sbjct 56655 AGGCGAGGACACGAGTCAGGAAGTGGCGTTCGGCGTCCTTGAGGCCATTCCAATCGTGCA 56714 Query 133379 TGTCCT--TGGACAGGTCCACCTCCTCGACGGTCCAAAACGACGCCT 133423 |||| ||| || || || ||||| ||||||||||||| |||| Sbjct 56715 GATCCTGCTGG--AGATCAACTTCCTCTGCGGTCCAAAACGATGCCT 56759 >seq210 Length=341256 Score = 140 bits (154), Expect = 3e-28 Identities = 171/230 (74%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 38232 CTCTTTaaaaaaaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGAC 38291 ||| || ||||||||| || || || || || |||||||| || || || || | || Sbjct 96600 CTCGTTCGAAAAATGCAGATCTTTGTGAAGACCCTCACGGGTAAGACGATTACTCTTGAG 96541 Query 38292 GTCGAGGCCACCGACAGCGT-GCAAACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAA 38349 ||||||||| | || | | | || || | | |||| || |||| ||||||||||| | Sbjct 96540 GTCGAGGCCTCTGATAACATCGCGAATG--TGAAGACTAAGATCCAGGACAAAGAGGGCA 96483 Query 38350 TTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCC 38409 |||| ||||||| ||||| ||||| | ||| ||||| ||||| || || || ||||| | Sbjct 96482 TTCCTCCCGACCAGCAGCGTCTCATCTTCGCTGGCAAGCAGCTCGAGGATGATCGCACTC 96423 Query 38410 TCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 | |||||||||||||| |||||| |||| || || | ||| ||||| Sbjct 96422 TGTCAGACTACAACATCCAGAAGGAATCGACTCTTCACCTTGTGTTGCGT 96373 >seq135 Length=363025 Score = 134 bits (148), Expect = 1e-26 Identities = 163/217 (75%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||||||||| ||||||||| | || |||||| | | Sbjct 298399 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTTGAGGTCGAGTCTTCG 298340 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | | |||| |||| || || | ||||| ||||| || |||||| |||| Sbjct 298339 GACACCATCGAGAACG-TTAAGACTAAGATTCAGGACAAGGAGGGTAT-CCCGCCTGACC 298282 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| |||| || | ||| ||||| ||||| || || | ||| || | |||||||||| Sbjct 298281 AGCAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACA 298222 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| |||||| | || || ||| ||||||| || Sbjct 298221 ACATCCAGAAGGAATCTACCCTCCATCTGGTGCTTCG 298185 Score = 131 bits (144), Expect = 2e-25 Identities = 163/218 (75%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||||||||| ||||||||| | || |||||| | | Sbjct 297943 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTGGAGGTCGAGTCTTCG 297884 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC-GACC 38361 |||| | | | |||| |||| || || | ||||| ||||| || |||||| || | Sbjct 297883 GACACCATCGAGAACG-TTAAGACTAAGATTCAGGACAAGGAGGGTAT-CCCGCCTGATC 297826 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| |||| || | ||| ||||| ||||| || || | ||| || | |||||||||| Sbjct 297825 AGCAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACA 297766 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| |||||| | || || ||| ||||||| ||| Sbjct 297765 ACATCCAGAAGGAATCTACCCTCCATCTGGTGCTTCGT 297728 Score = 125 bits (138), Expect = 7e-24 Identities = 163/219 (74%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| ||||| ||||||||| | || |||||| | | Sbjct 299083 ATGCAGATTTTCGTCAAGACCCTCACCGGCAAGACCATCACCCTGGAGGTCGAGTCTTCG 299024 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GAC 38360 |||| | | | |||| | |||| || || | ||||| || ||||| |||||| ||| Sbjct 299023 GACACCATTGAGAACG--TGAAGACTAAGATTCAGGACAAGGAAGGAAT-CCCGCCTGAC 298967 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| | || | ||| || || ||||| || |||| |||||||| ||| ||| Sbjct 298966 CAGCAGCGTTTGATCTTCGCTGGAAAGCAGCTCGAGGACGGCCGCACCCTTTCCGATTAC 298907 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||| || |||||| | || || || |||||||||||| Sbjct 298906 AACATTCAGAAGGAATCCACTCTCCACTTGGTGCTGCGT 298868 Score = 122 bits (134), Expect = 9e-23 Identities = 160/218 (73%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || || ||||| || || |||||||| |||| |||||| || | Sbjct 299311 ATGCAGATTTTCGTCAAGACCCTCACCGGGAAGACCATCACTCTCGAGGTCGAGTCCTCG 299252 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | || | | |||| || || | ||||| || || || ||| | |||| Sbjct 299251 GACACCATCGAGAATG--TGAAGACGAAGATTCAGGACAAGGAAGGCATCCCCCCTGACC 299194 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| ||||||| | ||| || || ||||| || |||| ||||||||| |||||||| Sbjct 299193 AGCAGAGGCTCATCTTCGCCGGTAAGCAGCTTGAAGACGGACGCACCCTCTCCGACTACA 299134 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| ||||| | || || ||| | || || ||| Sbjct 299133 ACATCCAGAAGGAGTCTACTCTCCATCTCGTCCTTCGT 299096 Score = 120 bits (132), Expect = 3e-22 Identities = 159/217 (73%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || ||||||||||| ||||||||| | || |||||| | | Sbjct 298171 ATGCAGATCTTTGTCAAGACCCTCACGGGCAAGACCATCACCCTGGAGGTCGAGTCTTCG 298112 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | |||| || || | ||||| ||||| || || | || | Sbjct 298111 GACACCATCGAGAACG--TGAAGACTAAGATTCAGGACAAGGAGGGTATCCCACCTGATC 298054 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||| |||| || | ||| || || ||||| || || | ||| || | |||||||||| Sbjct 298053 AGCAGAGGCTTATCTTCGCTGGTAAGCAGCTCGAGGATGGGCGTACGTTGAACGACTACA 297994 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 ||||||| |||||| | || || ||| ||||||| || Sbjct 297993 ACATCCAGAAGGAATCTACTCTCCATCTGGTGCTTCG 297957 Score = 107 bits (118), Expect = 2e-18 Identities = 159/219 (73%), Gaps = 6/219 (3%) Strand=Plus/Minus Query 38244 aTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || || || || | || || || || |||||| | || || |||||| | Sbjct 298855 ATGCAGATTTTTGTCAAGACCTTGACTGGAAAGACTATCACCCTGGAGGTTGAGGCCTCG 298796 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GAC 38360 |||| | | || | | |||| || || | ||||| ||||| || |||||| ||| Sbjct 298795 GACACTATTGAGAATG--TGAAGACGAAGATTCAGGACAAGGAGGGCAT-CCCGCCTGAC 298739 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | ||| ||||| ||||| || |||| ||||| ||| |||||| Sbjct 298738 CAGCAGAGGCTTATCTTCGCTGGCAAGCAGCTCGAGGACGGTCGCACTCTCTCTGACTAC 298679 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||||||||||| | || || |||||||| || ||| Sbjct 298678 AACATCCAAAAGGAGTCTACTCTTCATTTGGTTCTTCGT 298640 Score = 104 bits (114), Expect = 2e-17 Identities = 156/218 (72%), Gaps = 4/218 (2%) Strand=Plus/Minus Query 38243 aaTGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || || ||||| || ||||| || || ||| | || |||||| | | Sbjct 298628 AATGCAGATTTTTGTCAAGACGCTAACAGGCAAGACAATTACCCTTGAGGTCGAGTCTTC 298569 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||| | | |||| | |||| || || | || || ||||| || || | ||| Sbjct 298568 GGACACTATTGAGAACG--TGAAGACTAAGATTCAGGATAAGGAGGGTATCCCACCTGAC 298511 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||| |||| || | ||| ||||| ||||| || || | || || | ||||||||| Sbjct 298510 CAGCAGAGGCTTATCTTCGCCGGCAAGCAGCTCGAGGATGGACGTACGTTGAACGACTAC 298451 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||||| |||||| | || || ||| ||||||| || Sbjct 298450 AACATCCAGAAGGAATCTACCCTCCATCTGGTGCTTCG 298413 >seq898 Length=425369 Score = 132 bits (146), Expect = 5e-26 Identities = 180/249 (72%), Gaps = 3/249 (1%) Strand=Plus/Plus Query 132903 GTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCAT 132962 |||||||||||| || ||||| | || ||||||||||| ||| || | ||| ||||| Sbjct 413350 GTCGCAATGCAACCCTTCGTCACGAGAGATGAGTTCGTTAGAGAAGGTGAGGCCCGGCAT 413409 Query 132963 GAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTC 133022 | ||| || || ||||| | || |||||| ||| |||||| ||||| | |||||| Sbjct 413410 CAAGCCACGCTTCTTGAGGTAGAAAATGGCGCAAAAAGAGCCCGAGAAGAAAATGCCCTC 413469 Query 133023 GACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCG 133082 ||||| || || ||||| || ||||| |||||| | | || || || |||||||| Sbjct 413470 CACGGCGGCAAAGGCCACGAGTCGCTCTGCGAACGAGCC--CTGTG-AGGAAATCCAGCG 413526 Query 133083 CAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTTCAACAAACG 133142 | ||||| |||||||| ||| || || ||| ||||||||| | ||||| || Sbjct 413527 AATGGCCCAATCGGCCTTGCGAGCGACACAGGGAATCTCTTCGATGGCCCTGAACAATCG 413586 Query 133143 GAGTTTCTC 133151 | ||||| Sbjct 413587 CTGCTTCTC 413595 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500167010499840