Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_014637.1 Length=617453 Score E Sequences producing significant alignments: (Bits) Value seq926 138 4e-27 seq89 138 4e-27 seq561 105 3e-17 >seq926 Length=180086 Score = 138 bits (152), Expect = 4e-27 Identities = 208/294 (71%), Gaps = 9/294 (3%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || ||| | || |||||||| || || || ||||| |||||| | || | |||||||| Sbjct 82956 GTAACTCAAGCTGTAATTACAGTCCCTGCATATTTTAATGATTCTCAGAGACAAGCAACA 83015 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| || || |||||||| || |||| | |||| ||||||||||| |||||| Sbjct 83016 AAAGATGCTGGTCAGATTGCTGGACTAGATGTCTTAAGAATAATTAATGAACCAACAGCA 83075 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 ||| | | ||||||| ||| || |||| ||||| | ||| |||||| || Sbjct 83076 GCTTCATTGTCATATGGTTTAG----AT-AAAAAAAACA----ATGAAACTATTTTGGTT 83126 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 |||||||| || || || || |||| ||||||| | | | | ||| || || || Sbjct 83127 TTTGATTTAGGAGGCGGCACATTTGATGTTTCTGTATTAGAAGTAGGAGACGGTGTTTTC 83186 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 || || | || ||||||||||| |||| || || ||| |||||||| Sbjct 83187 GAGGTTTTATCTACATCAGGTGATACTCACTTAGGTGGAGATGATTTTGATAAT 83240 >seq89 Length=37195 Score = 138 bits (152), Expect = 4e-27 Identities = 208/294 (71%), Gaps = 9/294 (3%) Strand=Plus/Plus Query 451313 GTTACTGATGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACT 451372 || ||| | || |||||||| || || || ||||| |||||| | || | |||||||| Sbjct 31768 GTAACTCAAGCTGTAATTACAGTCCCTGCATATTTTAATGATTCTCAGAGACAAGCAACA 31827 Query 451373 AAAGATGCAGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCA 451432 |||||||| || || |||||||| || |||| | |||| ||||||||||| |||||| Sbjct 31828 AAAGATGCTGGTCAGATTGCTGGACTAGATGTCTTAAGAATAATTAATGAACCAACAGCA 31887 Query 451433 GCTGCTCTAGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTA 451492 ||| | | ||||||| ||| || |||| ||||| | ||| |||||| || Sbjct 31888 GCTTCATTGTCATATGGTTTAG----AT-AAAAAAAACA----ATGAAACTATTTTGGTT 31938 Query 451493 TTTGATTTTGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTT 451552 |||||||| || || || || |||| ||||||| | | | | ||| || || || Sbjct 31939 TTTGATTTAGGAGGCGGCACATTTGATGTTTCTGTATTAGAAGTAGGAGACGGTGTTTTC 31998 Query 451553 GAAGTAAAGGCAACCAATGGTGATACTCATCTAGGAGGTGAAGATATTGATAAT 451606 || || | || ||||||||||| |||| || || ||| |||||||| Sbjct 31999 GAGGTTTTATCTACATCAGGTGATACTCACTTAGGTGGAGATGATTTTGATAAT 32052 >seq561 Length=217300 Score = 105 bits (116), Expect = 3e-17 Identities = 189/276 (68%), Gaps = 0/276 (0%) Strand=Plus/Minus Query 451321 TGCAGTAATTACTGTTCCCGCTTATTTCAATGATGCACAACGGCAAGCAACTAAAGATGC 451380 |||||| | || ||||| || || || || ||||| || || || || ||||| Sbjct 203174 TGCAGTCGTCACAGTTCCGGCCTACTTTAACGATGCCCAGCGCTCTGCTACCCGTGATGC 203115 Query 451381 AGGACATATTGCTGGTTTAAATGTTCTTCGAATTATTAATGAACCTACAGCAGCTGCTCT 451440 || ||||||||||| | || ||||| || || || |||||||| || || ||| | Sbjct 203114 GGGCGTCATTGCTGGTTTGGACGTCCTTCGTATCATCAACGAACCTACCGCTGCCGCTTT 203055 Query 451441 AGCATATGGACTAGGAAAATCAAAAGAAACAGAAGaaaaaaaTATTTTAGTATTTGATTT 451500 || |||||||| | || ||||||| || || || |||||| | || || ||| | Sbjct 203054 GGCCTATGGACTGGACAAGACAAAAGAGGAGGAGGAGAAGAATATTCTCGTCTTCGATCT 202995 Query 451501 TGGTGGAGGAACTCATGATACTTCTGTACTTTCAATTGAAGATGGGGTATTTGAAGTAAA 451560 |||||| || ||| ||| | | || | ||||| | || || || || || Sbjct 202994 TGGTGGCGGTACTTTCGATGTCACCTTGCTCACCATTGACAAGGGCGTGTTCGAGGTCCT 202935 Query 451561 GGCAACCAATGGTGATACTCATCTAGGAGGTGAAGA 451596 || |||||||||||||| ||||| ||||| || || Sbjct 202934 TGCTACCAATGGTGATACCCATCTCGGAGGAGAGGA 202899 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1975694959336008