Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_014649.1 Length=1181549 Score E Sequences producing significant alignments: (Bits) Value seq926 159 3e-33 seq89 159 3e-33 seq406 123 2e-22 seq825 98.7 8e-15 >seq926 Length=180086 Score = 159 bits (176), Expect = 3e-33 Identities = 272/394 (69%), Gaps = 18/394 (5%) Strand=Plus/Minus Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332 ||||||||| ||||| | ||| || || ||||| |||||||| || ||||| | || || Sbjct 83987 AATACCATTAGCATCTATATCGAAAGTTACTTCTATTTGAGGTACACCTCTTGGTGCTGG 83928 Query 517333 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 517392 || || |||| |||| ||||| || | ||||||||||| || |||| |||||| Sbjct 83927 CATAATACCATCCAGTCTAAAAGTTCCTAGGCTTTTATTATCTTTTGTAAATTCTCGTTC 83868 Query 517393 ACCCTCGAAAATTTGGATAGTAACTACA---GTTTGATTATCTGAATAAGTTGTAAATAC 517449 || | | ||| || | | ||||| | ||||||||| | ||||| || || Sbjct 83867 TCCTTGTAGAATATG---AATTTCTACATTCGGCTGATTATCTACAGCAGTTGAGAAAAC 83811 Query 517450 TCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACC 517509 | ||||||||| ||| | ||||| |||| ||||||| || ||||| | |||||| Sbjct 83810 TTCTGATTTTTTAGTAGGTACAGTTGTATTTCGTGCAATAATTTTTGTCATTACACCACC 83751 Query 517510 TGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTT 517569 | ||||||| || | || | |||||| ||||| | ||||| ||| | Sbjct 83750 TAAAGTTTCTACCCCCAATGATAAAGGAGTAACATCTA-----ACAAT-------AGTAT 83703 Query 517570 TTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 517629 || | | || |||| | | || | ||||||||| ||| || ||| ||||| |||| Sbjct 83702 ATCTTTAACTTCACCAGCTAAAACACCTGCTTGAACAGCTGCTCCAATAGCAACTACTTC 83643 Query 517630 ATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 517663 ||| ||||| ||| ||| ||| | | ||||||| Sbjct 83642 ATCTGGATTTACACTTTGATTAGGATCTTTACCA 83609 Score = 152 bits (168), Expect = 4e-31 Identities = 209/291 (72%), Gaps = 6/291 (2%) Strand=Plus/Minus Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 |||||||||||| || || || || | ||||| ||||| |||| | || | ||||| Sbjct 83240 ATTATCAAAATCATCTCCACCTAAGTGAGTATCACCTGATGTAGATAAAACCTCGAAAAC 83181 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 || ||| | | || | || |||||| || || || || | |||||||| | Sbjct 83180 ACCGTCTCCTACTTCTAATACAGAAACATCAAATGTGCCGCCTCCTAAATCAAAAACCAA 83121 Query 518143 TACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 518202 | | | ||| |||| || ||||||| | |||||| | || | ||| || ||||| Sbjct 83120 AATAGT---TTCATTGTTTT---TTTTATCTAAACCATATGACAATGAAGCTGCTGTTGG 83067 Query 518203 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262 ||||||||| ||||| || |||| || |||||||| || |||||||| || ||||| Sbjct 83066 TTCATTAATTATTCTTAAGACATCTAGTCCAGCAATCTGACCAGCATCTTTTGTTGCTTG 83007 Query 518263 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC 518313 ||| || ||||| |||||||||||||| || ||||| || || | |||||| Sbjct 83006 TCTCTGAGAATCATTAAAATATGCAGGGACTGTAATTACAGCTTGAGTTAC 82956 Score = 113 bits (124), Expect = 3e-19 Identities = 122/159 (77%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 322239 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATT-TTAAGAACATCTAAA 322297 ||||||| |||| | | ||||| |||||||||||||||||| |||||| |||||| Sbjct 83097 CTAAACCATATGACAATGAAGCTGCTGTTGGTTCATTAATTATTCTTAAGA-CATCTAGT 83039 Query 322298 CCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGT 322357 || ||||| | | ||| ||| |||||||||||||| | |||||||||||||| || Sbjct 83038 CCAGCAATCTGACCAGCATCTTTTGTTGCTTGTCTCTGAGAATCATTAAAATATGCAGGG 82979 Query 322358 ACAGTAATAACTGCTTTATTAATAGGTTTTTGTAAATAT 322396 || ||||| || |||| | | | || || | ||||||| Sbjct 82978 ACTGTAATTACAGCTTGAGTTACAGTTTGTCCTAAATAT 82940 Score = 91.5 bits (100), Expect = 1e-12 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 321415 ATTATTTTTAGTCAATTTTCTTTCACCCTCAAAAATTTTAATGTTGACATTATCTTGATC 321474 ||||| ||| || |||| || ||| || | | ||| | ||| | ||||| |||| Sbjct 83891 ATTATCTTTTGTAAATTCTCGTTCTCCTTGTAGAATATGAATTTCTACATTCGGCTGATT 83832 Query 321475 ATCTGTATCAGTTGAAAAAATTTTAGttttttttGTAGGTATTACTGTATTTCGTGGAAT 321534 |||| | ||||||| |||| || | |||||| ||||||| ||||||||||| ||| Sbjct 83831 ATCTACAGCAGTTGAGAAAACTTCTGATTTTTTAGTAGGTACAGTTGTATTTCGTGCAAT 83772 Query 321535 AATTACTGTCATT--TGTTTCTGAAGTGTTTCCACACCTAATGATAATGGTGTAATATCC 321592 |||| ||||||| || || ||||| || || |||||||| || |||| ||| Sbjct 83771 AATTTTTGTCATTACACCACCTAAA--GTTTCTACCCCCAATGATAAAGGAGTAACATCT 83714 Query 321593 AACAAAACTAAAT 321605 ||||| | || || Sbjct 83713 AACAATAGTATAT 83701 >seq89 Length=37195 Score = 159 bits (176), Expect = 3e-33 Identities = 272/394 (69%), Gaps = 18/394 (5%) Strand=Plus/Minus Query 517273 AATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGG 517332 ||||||||| ||||| | ||| || || ||||| |||||||| || ||||| | || || Sbjct 32799 AATACCATTAGCATCTATATCGAAAGTTACTTCTATTTGAGGTACACCTCTTGGTGCTGG 32740 Query 517333 TGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTC 517392 || || |||| |||| ||||| || | ||||||||||| || |||| |||||| Sbjct 32739 CATAATACCATCCAGTCTAAAAGTTCCTAGGCTTTTATTATCTTTTGTAAATTCTCGTTC 32680 Query 517393 ACCCTCGAAAATTTGGATAGTAACTACA---GTTTGATTATCTGAATAAGTTGTAAATAC 517449 || | | ||| || | | ||||| | ||||||||| | ||||| || || Sbjct 32679 TCCTTGTAGAATATG---AATTTCTACATTCGGCTGATTATCTACAGCAGTTGAGAAAAC 32623 Query 517450 TCTGGATTTTTTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACC 517509 | ||||||||| ||| | ||||| |||| ||||||| || ||||| | |||||| Sbjct 32622 TTCTGATTTTTTAGTAGGTACAGTTGTATTTCGTGCAATAATTTTTGTCATTACACCACC 32563 Query 517510 TGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTT 517569 | ||||||| || | || | |||||| ||||| | ||||| ||| | Sbjct 32562 TAAAGTTTCTACCCCCAATGATAAAGGAGTAACATCTA-----ACAAT-------AGTAT 32515 Query 517570 TTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTC 517629 || | | || |||| | | || | ||||||||| ||| || ||| ||||| |||| Sbjct 32514 ATCTTTAACTTCACCAGCTAAAACACCTGCTTGAACAGCTGCTCCAATAGCAACTACTTC 32455 Query 517630 ATCAGGATTAACAGTTTCATTTAGTTTTTTACCA 517663 ||| ||||| ||| ||| ||| | | ||||||| Sbjct 32454 ATCTGGATTTACACTTTGATTAGGATCTTTACCA 32421 Score = 152 bits (168), Expect = 4e-31 Identities = 209/291 (72%), Gaps = 6/291 (2%) Strand=Plus/Minus Query 518023 ATTATCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAG 518082 |||||||||||| || || || || | ||||| ||||| |||| | || | ||||| Sbjct 32052 ATTATCAAAATCATCTCCACCTAAGTGAGTATCACCTGATGTAGATAAAACCTCGAAAAC 31993 Query 518083 TCCATCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAG 518142 || ||| | | || | || |||||| || || || || | |||||||| | Sbjct 31992 ACCGTCTCCTACTTCTAATACAGAAACATCAAATGTGCCGCCTCCTAAATCAAAAACCAA 31933 Query 518143 TACATTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 518202 | | | ||| |||| || ||||||| | |||||| | || | ||| || ||||| Sbjct 31932 AATAGT---TTCATTGTTTT---TTTTATCTAAACCATATGACAATGAAGCTGCTGTTGG 31879 Query 518203 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262 ||||||||| ||||| || |||| || |||||||| || |||||||| || ||||| Sbjct 31878 TTCATTAATTATTCTTAAGACATCTAGTCCAGCAATCTGACCAGCATCTTTTGTTGCTTG 31819 Query 518263 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTAC 518313 ||| || ||||| |||||||||||||| || ||||| || || | |||||| Sbjct 31818 TCTCTGAGAATCATTAAAATATGCAGGGACTGTAATTACAGCTTGAGTTAC 31768 Score = 113 bits (124), Expect = 3e-19 Identities = 122/159 (77%), Gaps = 2/159 (1%) Strand=Plus/Minus Query 322239 CTAAACCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATT-TTAAGAACATCTAAA 322297 ||||||| |||| | | ||||| |||||||||||||||||| |||||| |||||| Sbjct 31909 CTAAACCATATGACAATGAAGCTGCTGTTGGTTCATTAATTATTCTTAAGA-CATCTAGT 31851 Query 322298 CCCGCAATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGT 322357 || ||||| | | ||| ||| |||||||||||||| | |||||||||||||| || Sbjct 31850 CCAGCAATCTGACCAGCATCTTTTGTTGCTTGTCTCTGAGAATCATTAAAATATGCAGGG 31791 Query 322358 ACAGTAATAACTGCTTTATTAATAGGTTTTTGTAAATAT 322396 || ||||| || |||| | | | || || | ||||||| Sbjct 31790 ACTGTAATTACAGCTTGAGTTACAGTTTGTCCTAAATAT 31752 Score = 91.5 bits (100), Expect = 1e-12 Identities = 137/193 (71%), Gaps = 4/193 (2%) Strand=Plus/Minus Query 321415 ATTATTTTTAGTCAATTTTCTTTCACCCTCAAAAATTTTAATGTTGACATTATCTTGATC 321474 ||||| ||| || |||| || ||| || | | ||| | ||| | ||||| |||| Sbjct 32703 ATTATCTTTTGTAAATTCTCGTTCTCCTTGTAGAATATGAATTTCTACATTCGGCTGATT 32644 Query 321475 ATCTGTATCAGTTGAAAAAATTTTAGttttttttGTAGGTATTACTGTATTTCGTGGAAT 321534 |||| | ||||||| |||| || | |||||| ||||||| ||||||||||| ||| Sbjct 32643 ATCTACAGCAGTTGAGAAAACTTCTGATTTTTTAGTAGGTACAGTTGTATTTCGTGCAAT 32584 Query 321535 AATTACTGTCATT--TGTTTCTGAAGTGTTTCCACACCTAATGATAATGGTGTAATATCC 321592 |||| ||||||| || || ||||| || || |||||||| || |||| ||| Sbjct 32583 AATTTTTGTCATTACACCACCTAAA--GTTTCTACCCCCAATGATAAAGGAGTAACATCT 32526 Query 321593 AACAAAACTAAAT 321605 ||||| | || || Sbjct 32525 AACAATAGTATAT 32513 >seq406 Length=280524 Score = 123 bits (136), Expect = 2e-22 Identities = 673/1062 (63%), Gaps = 32/1062 (3%) Strand=Plus/Plus Query 517265 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 517324 || || |||||||| ||||| || | ||| || || || ||||| || || || || | | Sbjct 117637 ACGTTGAGAATACCGTTGGCGTCGATATCGAAGGTAACCTCAATCTGGGGCACACCACGC 117696 Query 517325 TGAGCAGGTGGGATCCCTTCCAAA--TTAAATGTTCCCAGATTATTATTATCTTTAGTGA 517382 | || || ||||| || | ||| | || | || || | ||||| || || ||| Sbjct 117697 GGGGCTGGGGGGATTCC--CGAAAGCTCGAACTTGCCAAGGATGTTATTGTCCTTCGTGC 117754 Query 517383 ATTTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTG 517442 | || ||||||||||| | || || || ||| || || || | || || | Sbjct 117755 GAGTACGCTCACCCTCGAAGACCTGAATGAGCACACCAGGCTGGTTGTCAGCGTACGTAG 117814 Query 517443 TAAATACTCTGGATTTT-TTACAAGGAATTGTTGTGTTTCTATCAATAATATTGGTCATA 517501 || | |||| || || || || || |||||||| | || | ||||||| Sbjct 117815 AGAAGA-TCTGCTGCTTCTTGGTCGGGATAGTAGTGTTTCTCTTGATGAGGACGGTCATA 117873 Query 517502 ATACCACCTGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTT 517561 | ||||| || || || | ||||||||| || || |||||||||| |||| | || Sbjct 117874 ACGCCACCAGCGGTCTCGATACCAAGAGAGAGCGGGGTGACATCAAGCAGGAGCAAATCC 117933 Query 517562 TGAAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCA 517621 ||| || ||| ||| | ||| | || || || || || | || |||||||| ||| Sbjct 117934 TGAGTCTTCTCAGAAGTATCACCGGCGAGGATGGCAGCCTGGACGGCGGCACCATAAGCA 117993 Query 517622 ACAGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGA 517681 ||||||||||| || || | | | |||| || || ||||| || | || || Sbjct 117994 ACAGCTTCATCCGGGTTGATGTTCTTGCAGAGTTCCTTGCCGTTGAAGAA--GTCAATGA 118051 Query 517682 AGTTGTCTT--ACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCT 517739 | | | |||||||| ||||| | || || ||||| | || || |||| || | Sbjct 118052 GGAGACCCTGGACCTTAGGGATACGGGTGGAACCACCAACGAGGACGATGTCATCAACAT 118111 Query 517740 GTGATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAA-CGGGTTCAAGACCCGCTCTA 517798 | || | ||||| || | ||| || |||| ||| | |||| | | | Sbjct 118112 CAGCCTTGGGGATCTTTGAGTCGCGGAGAACCTTCTCAACCGGCTCCAAGGTAC-CACGG 118170 Query 517799 AACAAGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGA-CATTATAA-TCAA 517856 || | ||| || || |||||||| || || | || |||||| | || || |||| Sbjct 118171 AAAAGGTCCATGCAGAGCTCTTCGAACTTGGCACGCGT--GAGTGAGGAGTAGAAGTCAA 118228 Query 517857 TTCCTTCGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTT 517916 |||||||| | || |||| || || |||| ||||| | | || || ||| | Sbjct 118229 CACCTTCGAAAAGCGAGTCAATCTCGATGGTAGCCTGAGTGGCGGCGGACAGCTGACGCT 118288 Query 517917 TAGCACGTTCACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGATTCAAA--TC 517974 | ||||| || || || | || | || | || | ||||| ||| || Sbjct 118289 TCGCACGCTCGCACTGAGTGCGAAGACGACGGAGGG--AACGGGGATTGCCAGAAATGTC 118346 Query 517975 TGTTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATC 518034 | || | || |||||||| || | | | | | || | ||| ||||| ||||| Sbjct 118347 CTTCTTGTTCTTCCTCTTGAACTCGTTCATAAAGTGGTTGACCATACGGTTATCGAAATC 118406 Query 518035 TTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAG 518094 |||||| || | | ||| | || | || || | || | ||| | ||||| |||| Sbjct 118407 TTCACCACCGAGATGAGTGTCACCAGCAGTGGCCTTCACCTCGAAGATACCATCCTCAAT 118466 Query 518095 AGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTC 518154 || | || | ||||| |||||||||||| | ||| || || || || ||| | || Sbjct 118467 AGTGAGGAGGGAGACATCGAAGGTTCCACCACCAAGATCGAAGATGAGAACGTTCCTCTC 118526 Query 518155 TTT----GTCTTG--------GTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGG 518202 || |||| | || || | ||| || || | || || || || || Sbjct 118527 CTTGGCGGTCTGGCCTCCAGCCTTGCGGTCCAAACCGTAGGCGATGGCGGCGGCGGTGGG 118586 Query 518203 TTCATTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTG 518262 ||||| ||||| | | || || ||||| ||||| | || ||||| || || || | Sbjct 118587 CTCATTGATAATACGAGAGACGTTGAGACCGGCAATGGTACCGGCATCCTTGGTAGCCAG 118646 Query 518263 TCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGC 518304 || || || ||||| || || || || ||||| |||||||| Sbjct 118647 CCTCTGCGAGTCGTTGAAGTAGGCGGGGACAGTGATAACGGC 118688 >seq825 Length=440673 Score = 98.7 bits (108), Expect = 8e-15 Identities = 237/359 (66%), Gaps = 6/359 (2%) Strand=Plus/Minus Query 518027 TCAAAATCTTCACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCA 518086 ||||| |||||||| || | | ||||| ||| |||| || | ||| | ||| Sbjct 26547 TCAAAGTCTTCACCACCGAGATGAGTATCTCCGTTAGTAGAAAGAACCTCGAAGACTCCG 26488 Query 518087 TCTTCAAGAGACAAAAGAGTTACATCATGGGTTCCACCACCCATATCAAAAATAAGTACA 518146 || || | || | |||||| ||||| ||||||||| || | ||| || ||| Sbjct 26487 TCGTCGATAGTGAGAAGAGTAACATCGAAGGTTCCACCTCCGAGATCGAA------TACC 26434 Query 518147 TTCATTTCTTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCA 518206 | || | || || || || | |||||| || |||| || ||||| || || || Sbjct 26433 ATAATGTTCTTCTCGCCCTTCTTGTTAAGACCGTAGGCAATGGCGGCAGCGGTGGGCTCG 26374 Query 518207 TTAATAATTCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTT 518266 ||||| || | || || ||||||||||| || | || || || || ||||| || | Sbjct 26373 TTAATGATGCGCATGACGTTAAGACCAGCGATGGTACCAGCGTCCTTGGTGGCCTGGCGC 26314 Query 518267 TGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCAGTTACTTCTTTACCAATA 518326 || | |||||| || || || || ||||| | ||||| | | ||||| || || | | Sbjct 26313 TGAGCATCGTTGAAGTAGGCTGGGACAGTGACGACGGCGTTCTTCACTTCCTTGCCTAGA 26254 Query 518327 TAAGCGCTTGCCGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTTCTGGGGA 518385 || | || |||| ||||| |||| || | ||| | ||||| || || || || Sbjct 26253 TACTCCTCGGCAGTTTTCTTCATCTTACCCAAGACCATGGCGGAAATCTGCTCGGGAGA 26195 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3780776448829756