Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq524 136 5e-27 seq898 105 8e-18 seq387 82.4 9e-11 >seq524 Length=236013 Score = 136 bits (150), Expect = 5e-27 Identities = 283/415 (68%), Gaps = 20/415 (5%) Strand=Plus/Minus Query 15885 CGATCAAAGCGACCTGGGCGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTTGCG 15944 || ||||||||||| || | || | ||| | ||||| | |||| | | ||||| || Sbjct 46051 CGGTCAAAGCGACCCGGTCTCAGCAACGCCTGGTCAAGCACATCAGCTCTGTTCGTGGCA 45992 Query 15945 GCGATGACAACAATACCTGTTTCGTTA---TCAAAACCATCCATCTCTGTCAAAAGCTGG 16001 |||||||| | | ||| | |||| ||||| ||||||||||| || | | ||| Sbjct 45991 GCGATGACGATGACACCAGA---GTTACCCTCAAAGCCATCCATCTCCGTGAGCATTTGG 45935 Query 16002 TTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTC 16059 || | || || || || ||||| || | | ||| | | |||| | || | | Sbjct 45934 TTGAGCGTCTGCTCACGCTCATCGTTACCACCAGCAATTC--CGGCACCCCTCTGTCTGC 45877 Query 16060 CCACGGCATCAATCTCATCAATGAAGACGATGCATG----GTTGATTTTCGCGAGCGACT 16115 | ||||||||||||||||||||||| | |||||||| ||| |||| ||| || Sbjct 45876 CGACGGCATCAATCTCATCAATGAAAATGATGCATGGGGCGTTCTTTTTGGCGTTCG--- 45820 Query 16116 TCAAAGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCG 16175 |||| || || || || || || || ||||| || |||||||||||||| | | Sbjct 45819 -CAAACAGGTCACGCACGCGAGACGCACCAACACCGACGAACATCTCCACAAACTCAGAC 45761 Query 16176 GCGGAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGT 16234 ||| | || | || ||| |||||| || || || || | || || ||||| || || Sbjct 45760 CCGG-AGATGGAGAAGAACGGGACACCAGCCTCGCCGGCGACAGCGCGAGCGAGTAGGGT 45702 Query 16235 CTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 16289 |||||| || || || ||| |||||| | |||| || || ||| | |||||| Sbjct 45701 CTTACCAGTTCCGGGGGGTCCCTCGAGGATGACACCGCGCGGGATCCTAGCGCCA 45647 >seq898 Length=425369 Score = 105 bits (116), Expect = 8e-18 Identities = 109/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 102171 TCCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCC 102230 || || || ||||||||| | || ||||| || ||||| || |||||||| || || Sbjct 413505 TCGTTCGCAGAGCGACTCGTGGCCTTTGCCGCCGTGGAGGGCATTTTCTTCTCGGGCTCT 413446 Query 102231 TTCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAAC 102290 || ||||| |||| | ||||||||||| || | ||||| || ||| |||||| ||| Sbjct 413445 TTTTGCGCCATTTTCTACCTCAAGAAGCGTGGCTTGATGCCGGGCCTCACCTTCTCTAAC 413386 Query 102291 GAGCTTATCTCTCGTGACGAGGG 102313 || || |||||||||||||| || Sbjct 413385 GAACTCATCTCTCGTGACGAAGG 413363 >seq387 Length=288413 Score = 82.4 bits (90), Expect = 9e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 102186 CTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTAT 102245 ||| | || ||||| || ||||| || ||||| || || || || ||||| | | | Sbjct 56382 CTCGTGGCGTTTGCAGCCGTGGAGGGGATTTTCTTTTCGGGGTCGTTTTGCGCCGTGTTT 56323 Query 102246 TGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGT 102305 ||| | |||||| | || |||||||| || ||| |||||||||||||||||| || || Sbjct 56322 TGGATGAAGAAGAGGGGGCTCATGCCTGGGCTCACCTTCTCCAACGAGCTTATATCACGG 56263 Query 102306 GACGAGGG 102313 || || || Sbjct 56262 GATGAAGG 56255 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620735214906720