Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq759 125 8e-24 seq524 122 1e-22 seq387 86.0 7e-12 seq657 84.2 3e-11 seq172 84.2 3e-11 >seq759 Length=98512 Score = 125 bits (138), Expect = 8e-24 Identities = 288/430 (67%), Gaps = 8/430 (2%) Strand=Plus/Minus Query 109413 ATAATACATACCCGTTTTGAGACCAGCCTTCCATGCGTACATATGCATTGAAGAGAG-TT 109471 ||| |||| || || || || || |||||||| | || | |||||| || ||| || Sbjct 49347 ATAGTACAGTCCTGTCTTCAGTCCTGCCTTCCAGCCATAGAAATGCATGGAGCTGAGCTT 49288 Query 109472 TGGAAAGTGTCGGACTCTCCATAAACAAGTTCATCGACTGAGACTGATCGATGAATCGAC 109531 | || || || || |||| | |||||| ||| |||||||||||| | || Sbjct 49287 TCCAATGTTCGGGGCTG-CCATGTGAATGTTCATGCTCTGCGACTGATCGATGTAGGCAC 49229 Query 109532 CACGATCAGCCGCCATGTCGATGATACACTTTTGGCTAATTTCCCAGACAGTCTTGTACA 109591 | || ||||| || | || | |||| ||| ||||| |||||||||||||||||||| | Sbjct 49228 CCCGGTCAGCGGCGAGATCAAGAATACGCTTCTGGCTGATTTCCCAGACAGTCTTGTAGA 49169 Query 109592 AATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACCAGCCTTCACCA 109651 |||||| | ||||| || ||||||||||| ||| ||| || || | Sbjct 49168 GGGCGCGGATATCTGCAGGAATTTCGGGGATGTTTTGAACAGAACCATTCGCTGCAACTA 49109 Query 109652 TGAGATCCTTCATCTCTTTCGA---CCAGAGACCGACCTTTTTGAGATCGTCAACAAGAT 109708 || | | |||||| | || ||| || || | ||||| ||||| | || || | Sbjct 49108 TGCGGTTCTTCAT---GGTAGAATCCCACAGCCCAAGCTTTTGAAGATCCTTTACCAGGT 49052 Query 109709 GCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGT 109768 | |||| || | | || ||||||| | | ||| ||| | |||| |||| Sbjct 49051 GAGTGTTCACAATGCAGAACTCACCAGACAACACCCTTCGTGTGTACAGATTAGATGTGT 48992 Query 109769 AGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAG 109828 | || ||||| ||||||||||| || || || || | || ||||| || ||||| |||| Sbjct 48991 AAGGCTCGAAGCACTCATTGTTACCGAGAATCTGCGATGTTGAAGCGGTAGGCATTGGAG 48932 Query 109829 CCATGAGAAG 109838 | | ||| || Sbjct 48931 CAACGAGCAG 48922 >seq524 Length=236013 Score = 122 bits (134), Expect = 1e-22 Identities = 320/481 (67%), Gaps = 12/481 (2%) Strand=Plus/Minus Query 11503 CGATCGAAACGACCTGGGCGGAGTAGAGCATCATCAAGAATATCGACACGGTTTGTAGCG 11562 || || || ||||| || | || | || | ||||| | ||| | | ||| || || Sbjct 46051 CGGTCAAAGCGACCCGGTCTCAGCAACGCCTGGTCAAGCACATCAGCTCTGTTCGTGGCA 45992 Query 11563 GCAATGACTACAATGCCAGTCTCATTGTCGAAACCGTCCATTTCTGTGAGAAGCTGGTTG 11622 || ||||| | | |||| | | || || || ||||| || ||||| | |||||| Sbjct 45991 GCGATGACGATGACACCAGAGTTACCCTCAAAGCCATCCATCTCCGTGAGCATTTGGTTG 45932 Query 11623 ATCGTCTGTTCACGCTCATCGTTGGAGGGCATACCACCTGCCGAACGCTTCT---TACCG 11679 | |||||| |||||||||||||| | | | || | | | || | ||| | ||| Sbjct 45931 AGCGTCTGCTCACGCTCATCGTT--ACCACC-AGCAATTCCGGCACCCCTCTGTCTGCCG 45875 Query 11680 ACAGCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAA 11739 || || ||||||||||| ||||| | ||| || || ||| || ||||| || Sbjct 45874 ACGGCATCAATCTCATCAATGAAAATGATGCATGGGGCGTTCTTTTTGGC--GTTCGCAA 45817 Query 11740 A--GTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTGCGGCAG 11797 | | ||||| || || ||| |||||||| ||||||||||| || || | | | | Sbjct 45816 ACAGGTCACGCACGCGAGACGCACCAACACCGACGAACATCTCCACAAACTCAG-ACCCG 45758 Query 11798 AACACTGA-ATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTA 11856 | | || | ||| || ||| || ||| || |||| || |||||||| || |||||| Sbjct 45757 GAGATGGAGAAGAACGGGACACCAGCCTCGCCGGCGACAGCGCGAGCGAGTAGGGTCTTA 45698 Query 11857 CCCGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCACTTCCAAAG 11916 || || || || | || |||| | | | || || |||||| | || ||| || | Sbjct 45697 CCAGTTCCGGGGGGTCCCTCGAGGATGACACCGCGCGGGATCCTAGCGCCAAGCTCAGTG 45638 Query 11917 TAGCGCTCAGGCTTCTTGAGGAAGTCCACAATCTCCTCAAGTTCCTCCTTGGCGGAGTCG 11976 ||||||| | | ||||||||| | || | ||||| || || ||||||| |||| Sbjct 45637 AAGCGCTCCGATTCCTTGAGGAACTGGACGACCTCCTGGAGCTCGAGCTTGGCGCCGTCG 45578 Query 11977 A 11977 | Sbjct 45577 A 45577 >seq387 Length=288413 Score = 86.0 bits (94), Expect = 7e-12 Identities = 270/413 (65%), Gaps = 4/413 (1%) Strand=Plus/Plus Query 119507 ATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCC 119566 ||| | |||||||||||| || || ||||| || |||| || ||||||||||| || Sbjct 56248 ATGCAACCCTTCATCCCGTGATATAAGCTCGTTGGAGAAGGTGAGCCCAGGCATGAGCCC 56307 Query 119567 TCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACA 119626 || ||||| | |||||| | ||| ||||| || |||||||| || |||||||| Sbjct 56308 CCTCTTCTTCATCCAAAACACGGCGCAAAACGACCCCGAAAAGAAAATCCCCTCCACGGC 56367 Query 119627 GGCGAAAGCGAATAGACGCTCAGCAAAAGGTCGAGACTTGTCGAA-CCACTTGAGAGCCC 119685 || || || | || | || |||| | | | | | || |||| ||||||||| Sbjct 56368 TGCAAACGCCACGAGCCTTTCCACAAACCCT-GCGTCGGAGCTAATCCACCTGAGAGCCC 56426 Query 119686 AGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTCGAAAAGTTGCTTCTTTT 119745 | | ||||| | | ||| || | | | | ||| | || | | |||| | Sbjct 56427 ACTCCGCCTTTTTCCGCACGCACGGAATGCTCTCCACGGCCGCAAACAAAAGTGTCTTCT 56486 Query 119746 CAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGTCTCACCATGAACCATTT 119805 | ||| || |||||| ||||||| ||| || || | || || || | | Sbjct 56487 CCGCAGGGTCGGCTATATATGTATCAATCAGTAGTGAATACATTTCCGAGTGCACGTTCT 56546 Query 119806 CATTGTGTGACTGATAGGCATAAAATGAGCGAGCTTCGGAAATTTGCACTTCGTCAGCAA 119865 | || | |||| |||||||||| |||| ||||| | || || || || | |||| Sbjct 56547 CCATGGCGGCCTGAAAGGCATAAAAACAGCGCGCTTCTGGAAGCTGGACGTC-TGTGCAA 56605 Query 119866 AATTG-TTGTTGATATTTTCAAAAACAATTCCATCGGATCCAGCGAAGAATGC 119917 || | | | | | ||||| ||||||||||| || ||| | ||||| || || Sbjct 56606 AAGCGCTCGATAAGGTTTTCCAAAACAATTCCGTCAGATGCGGCGAAAAAGGC 56658 >seq657 Length=149966 Score = 84.2 bits (92), Expect = 3e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Minus Query 136716 ATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 |||||||||||||||||||| ||||||| ||||||||| |||| | ||||||||||| | Sbjct 13334 ATAGCTCAGTTGGTTAGAGCATGGTGCTAATAACGCCAGGGTCGCAGGTTCGAGCCCTGC 13275 Query 136776 TGGG 136779 |||| Sbjct 13274 TGGG 13271 >seq172 Length=15419 Score = 84.2 bits (92), Expect = 3e-11 Identities = 57/64 (89%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 136716 ATAGCTCAGTTGGTTAGAGCGTGGTGCTTATAACGCCAAGGTCACGGGTTCGAGCCCCGT 136775 |||||||||||||||||||| ||||||| ||||||||| |||| | ||||||||||| | Sbjct 10032 ATAGCTCAGTTGGTTAGAGCATGGTGCTAATAACGCCAGGGTCGCAGGTTCGAGCCCTGC 10091 Query 136776 TGGG 136779 |||| Sbjct 10092 TGGG 10095 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588969182602800