Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq759 214 2e-50 seq524 129 7e-25 seq926 114 2e-20 seq89 114 2e-20 seq774 95.1 1e-14 >seq759 Length=98512 Score = 214 bits (236), Expect = 2e-50 Identities = 1115/1758 (63%), Gaps = 50/1758 (3%) Strand=Plus/Minus Query 105595 ATAGTACATCCCGGTCTTGAGTCCTTGTTTCCACGCGTACATATGCATAGAAGAGAGCTT 105654 |||||||| || ||||| |||||| ||||| | || | |||||| || |||||| Sbjct 49347 ATAGTACAGTCCTGTCTTCAGTCCTGCCTTCCAGCCATAGAAATGCATGGAGCTGAGCTT 49288 Query 105655 GGACATCGTTGGACTTTCCATGAAAAGATTCATACTTTGACTCTGGTCAATGAAGCGACC 105714 || | || | ||||| || ||||| || || ||| || ||| || ||| Sbjct 49287 TCCAATGTTCGGGGCTGCCATGTGAATGTTCATGCTCTGCGACTGATCGATGTAGGCACC 49228 Query 105715 ACGTTGTGCCGCCATATCAATGACATCCTTCATCTTGATTTCCCACACTGTGCGGTAGAG 105774 || | || || | ||||| | | |||| |||||||||| || || |||||| Sbjct 49227 CCGGTCAGCGGCGAGATCAAGAATACGCTTCTGGCTGATTTCCCAGACAGTCTTGTAGAG 49168 Query 105775 ATTCTTGATATCATCTGGGATATCTGAGATATTTTGAATTGAACCCCCCGCCTTGACCAT 105834 |||||| | || || || | ||| ||||||| ||||| ||| || || Sbjct 49167 GGCGCGGATATCTGCAGGAATTTCGGGGATGTTTTGAACAGAACCATTCGCTGCAACTAT 49108 Query 105835 GAGATCCTTCATATCCTTGGA--CCAAAGACCAATCTTCTTGAGATCATTGACGAGATGC 105892 | | | |||||| | | | ||| || |||| ||| | ||||| || || || || Sbjct 49107 GCGGTTCTTCATGG--TAGAATCCCACAGCCCAAGCTTTTGAAGATCCTTTACCAGGTGA 49050 Query 105893 TTGTTGACAATCACAAACTCTCCCGCGAGGGTTCTTCTCAGATAGATGTTCGTCGTGTAG 105952 |||| ||||| ||||| || | | |||| || | || | ||||| Sbjct 49049 GTGTTCACAATGCAGAACTCACCAGACAACACCCTTCGTGTGTACAGATTAGATGTGTAA 48990 Query 105953 GGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGAGGCTGTTGGCATTGGTGCC 106012 || || ||||| ||||| ||||| | || || | || || || || |||||||| || Sbjct 48989 GGCTCGAAGCACTCATTGTTACCGAGAATCTGCGATGTTGAAGCGGTAGGCATTGGAGCA 48930 Query 106013 ATCAAAAGACTGTTACGAAGACC-CTTTTCCTTGATGCGT-TCCTTGAGAACATCCCAGT 106070 | | || || || | ||| || || | || | | ||| || ||||||||| Sbjct 48929 ACGAGCAGTGAATTGCGGACACCACTCTT--TAGAACCTTCTCCCGAAGGCCATCCCAGT 48872 Query 106071 CGTAGTTG----AGCTTGGTTTCACCTTCCCACATATCAAATTGAAGC--ACCCCTTGGG 106124 | | | | | || ||||| |||| | ||||| || | | |||| ||| Sbjct 48871 CCCATCGGCCAGAAGTGGGCTTCACGC-CCCAAAGGTCAAACTGGAACTGACCCTTTG-- 48815 Query 106125 ACGTGGGAGAACCCTCAAATGTCTCATAGGAACCTTGGGCTTCAGCCAATTCACAGCTCG 106184 || | || ||||| | ||||| || | ||| || || || || |||||| || | Sbjct 48814 ACATCGGGGAACCAATGTACGTCTCGTAAGGACCCTGCTCTGAAGACAGTTCACAACTGG 48755 Query 106185 CCTCCAGGGATGCGTGA--TACATGGTTTCAAAGATACGAGCATTCATCTCCTTGGCTTC 106242 ||| | | || ||| || | |||||| || ||| ||||| ||| ||| | Sbjct 48754 TCTCTACAGC-GC-TGAAGTAGAGGGTTTCGAAAATATCCTTATTCAACTCACGAGCTCC 48697 Query 106243 ATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCTTGAACACCCAA 106302 || ||||| | ||| | ||||||| || || || || |||| || | Sbjct 48696 CTCACTCTCAAACGGCATGCGCATGAGAATAAATGTGTCTGCAAGCCCCTGAATTCCGAT 48637 Query 106303 ACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGATAAAAATTTCT 106362 |||||| || | ||| ||||| || || || || || | ||||| || || Sbjct 48636 ACCAATTGGGCGGTGGCGCATGTTGGAATTCTTAGCTTCCTGGATAGGATAGAAGTTGAC 48577 Query 106363 GTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATGAAGTTTTTCATA 106422 ||| || ||| ||| ||||| | ||| ||||| || | |||| ||| | Sbjct 48576 GTCGATTACTTTGTTAAGATTGCGCGCAACCATCTTCGTCACACGGCGAAGGGCTTCGTG 48517 Query 106423 ATCAAAAGTGCGAGTC------TCTTC------ATTGACATACTTTGGAAGGGCGATTGA 106470 |||| | | |||| ||||| | | ||| |||| ||||| || || Sbjct 48516 ATCATATGACGGAGTGGAACCATCTTCCGGAACAATTACAAACTTGTTGAGGGCAATAGA 48457 Query 106471 TGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTACACAA 106530 ||||| ||||||||||| ||||||| | || ||||| | ||| ||||| || | Sbjct 48456 AGCCAAGTTGCAAACAGCAACCTCATCCGGGGCAGTATACTCAACAATCTCTGTGCAAAG 48397 Query 106531 GTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTTTTGTTGCACGCATCCTT 106590 |||||| || || || || | || | ||||| ||||| ||| || |||||||| Sbjct 48396 ATTGGAAGATTTGATGGTTCCGAGGTTTTGCTGGTTGCTCTTCCGGTTACAAGCATCCTT 48337 Query 106591 GTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGAGAATTGCCTTCCACA-CAT 106649 |||||||||||| || | || || || |||| | | |||||| || | ||| | | | Sbjct 48336 GTAGAGCATGTACGGATTTCCAGTTTCAATCTGGGCTTCGAGAATAGCATACCAGATCTT 48277 Query 106650 CGGCG-GCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAGGGCT 106708 || ||| | || |||| || || || ||| |||||||||| ||| || || Sbjct 48276 TCTCGCGCTCATGGAACTGCGT--GCTCGGCCGTCCTTCTCGTACTTTTCGTACAGCTCT 48219 Query 106709 TCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGAC 106768 ||||| || || |||||| ||||| || | || | ||||||||||| ||| Sbjct 48218 TCAAATTCAGTGCCATAGACGTCGGCCAGACCAGGGGACTCATTCGGACAGAAAAGCGAC 48159 Query 106769 CATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAG 106828 || || ||| | | || || |||||||| || |||||||| ||||| ||| | ||| Sbjct 48158 CACTGGCCATCAGCTTCGACGCGCTTCATAAAGAGGTCTGGGATCCATAGGCCGTAGAAG 48099 Query 106829 AGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACTCCATG 106888 || || | | || ||||| | || || || || | ||||| || || | | Sbjct 48098 AGGTCACGAGCCCTCTGTTCTTCCTTGCCATGATTCTTGCGAAGATCAAGAAAGTCGAGG 48039 Query 106889 ATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCG---ACGCCCAGCT 106945 ||||| |||||||| ||||| | ||||| || | | ||||| || | ||| || Sbjct 48038 ATATCTGCGTGCCAAGGCTCCAAATAGATAGCAAATGCACCCTTCCGCTTCCCGCCACCT 47979 Query 106946 TGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGAT 107005 || | ||||| | |||||| | || || || |||||||| || | ||| || | || Sbjct 47978 TGGTCCACATACCTAGCTGTGTCATTGAAGACACGAAGCATAGGCACAATTCCGTTCGAC 47919 Query 107006 TGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGCATCCCA 107065 ||| || || || || || || || || || | | ||||| || ||| Sbjct 47918 GTACCGTTGGTACCACGGATGTACGACTTTGTGCATCGGATGTTGTGGATAGACAATCCA 47859 Query 107066 ATACCCCCAGCCCACTTTGAGAT--TTGCGCA-CACTCCGTAAGAGTTCCATAGATACCG 107122 || || || || ||| || || | ||||| | || | ||||| |||| || || Sbjct 47858 ATGCCGCCTGCGGCCTTGGAAATGATAGCGCAGCGCT---TGAGAGTGTCATAAATGCCT 47802 Query 107123 TTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGTGTA 107182 | || |||||||| | | | || |||||||||| ||| | ||| || | || Sbjct 47801 TCAATGGAGTCCTCAGTCATAGTGAGAAGGAAGCAAGAGGATAGCTGGGGGCGGCAGGTG 47742 Query 107183 CCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGTCGT 107240 || |||||||| || ||||| | || || ||| | | |||| ||||| || | Sbjct 47741 CCTGCATTGAATAGCGTTGGCGAGGCATGGGTGA--AGAGCTTGTTGGACAGGGCATCAT 47684 Query 107241 ATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAAACA 107300 |||| ||| || | || || || | ||| ||||||| ||||||||||| | || Sbjct 47683 ATGTGCCCAGGATGGCTTCCATATCGCCGAGGTGAATGCCGACTGCCACACGCATGAGCA 47624 Query 107301 TGTATTGGGGTGTTTCCA 107318 | | ||||| | |||| Sbjct 47623 TATGCTGGGGCCTCTCCA 47606 >seq524 Length=236013 Score = 129 bits (142), Expect = 7e-25 Identities = 279/412 (68%), Gaps = 14/412 (3%) Strand=Plus/Minus Query 9192 CGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGCG 9251 || ||||||||||| || | || | ||| | ||||| | |||| | | ||||| || Sbjct 46051 CGGTCAAAGCGACCCGGTCTCAGCAACGCCTGGTCAAGCACATCAGCTCTGTTCGTGGCA 45992 Query 9252 GCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGGTTA 9311 |||||||| | | ||| | | | ||||| ||||||||||| || | | |||||| Sbjct 45991 GCGATGACGATGACACCAGAGTTACCCTCAAAGCCATCCATCTCCGTGAGCATTTGGTTG 45932 Query 9312 ATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTCCCA 9369 | || || || || ||||| || | | || | || |||| | || | || | Sbjct 45931 AGCGTCTGCTCACGCTCATCGTTACCACCAGC--AATTCCGGCACCCCTCTGTCTGCCGA 45874 Query 9370 CGGCATCAATCTCATCAATGAAGACAATACATG----GTTGATTTTCGCGGGCGATTTCA 9425 |||||||||||||||||||||| | || |||| ||| |||| |||| | || Sbjct 45873 CGGCATCAATCTCATCAATGAAAATGATGCATGGGGCGTTCTTTTT----GGCGTTCGCA 45818 Query 9426 AAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCG 9485 || || || || || | || || ||||| || |||||||||||||| | | || Sbjct 45817 AACAGGTCACGCACGCGAGACGCACCAACACCGACGAACATCTCCACAAACTCAGACCCG 45758 Query 9486 GAACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTT 9544 | | || | || ||| |||||| || || || || | || || ||||| || ||||| Sbjct 45757 G-AGATGGAGAAGAACGGGACACCAGCCTCGCCGGCGACAGCGCGAGCGAGTAGGGTCTT 45699 Query 9545 ACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGCCA 9596 ||| || || || ||| |||||| | |||| || || ||| | |||||| Sbjct 45698 ACCAGTTCCGGGGGGTCCCTCGAGGATGACACCGCGCGGGATCCTAGCGCCA 45647 >seq926 Length=180086 Score = 114 bits (126), Expect = 2e-20 Identities = 296/448 (66%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 9243 TTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9302 || || || || || || | || ||||| | | ||||| |||||||| || || || Sbjct 62182 TTAGTTGCTGCAATTACTATTATTCCTGTATTACCTTCAAAGCCATCCATTTCAGTTAAT 62241 Query 9303 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTT 9360 | ||| |||| |||||||| ||||||||||| | || | | | || | | | || Sbjct 62242 AATTGATTAAGTGTTTGTTCTCGTTCATCATTTCC--GCCTCCTATACCTGTTCCTCTTT 62299 Query 9361 GCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGA 9420 | || ||||||||||| |||||||| || |||||||| ||| |||||| || Sbjct 62300 GTCGACCTACGGCATCAATTTCATCAATAAAAACAATACAAGGTGCATTTTCTTTTGCTT 62359 Query 9421 TTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9480 ||| ||| | ||| | ||| ||| || || ||||| |||||||| || ||||| | || Sbjct 62360 TTTTAAATAAATCTCTAACTCTTGATGCTCCTACACCGACAAACATTTCGACAAATTCTG 62419 Query 9481 CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9540 | ||| || || || ||||||| |||||| || || ||| || | | || Sbjct 62420 ATCCTGAAATACTGAAAAAAGGTACATTAGCTTCACCTGCTATAGCTTTTGCCAATAAAG 62479 Query 9541 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGC---CAC 9597 | || || || || || ||| | || | |||| || ||| | || | || Sbjct 62480 TTTTTCCAGTTCCAGGAGGACCAACAAGTAACACACCTGTAGGTATCCTAGCTCCTACAG 62539 Query 9598 TTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCATCTTTGG 9657 | ||| || || |||||||| | |||| || | ||||| ||||| ||||| | Sbjct 62540 CTGTAAAACAT---TCTGGTTGCTTTAAAAAAGTTACTACTTCTTCAAATTCTTCTTTTG 62596 Query 9658 CGGCGTCAATCCCCTCAACATCGGTAAA 9685 | | ||||| || | ||||| |||| Sbjct 62597 CTTCATCAATTCCAGCTACATCATTAAA 62624 >seq89 Length=37195 Score = 114 bits (126), Expect = 2e-20 Identities = 296/448 (66%), Gaps = 10/448 (2%) Strand=Plus/Plus Query 9243 TTCGTCGCGGCGATGACAACAATACCTGTTTCATTATCAAAACCATCCATCTCTGTCAAA 9302 || || || || || || | || ||||| | | ||||| |||||||| || || || Sbjct 6911 TTAGTTGCTGCAATTACTATTATTCCTGTATTACCTTCAAAGCCATCCATTTCAGTTAAT 6970 Query 9303 AGTTGGTTAATAGTTTGTTCCCGTTCATCATTCGCTGGCATACCA--CCAGCACTGCGTT 9360 | ||| |||| |||||||| ||||||||||| | || | | | || | | | || Sbjct 6971 AATTGATTAAGTGTTTGTTCTCGTTCATCATTTCC--GCCTCCTATACCTGTTCCTCTTT 7028 Query 9361 GCTTTCCCACGGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGA 9420 | || ||||||||||| |||||||| || |||||||| ||| |||||| || Sbjct 7029 GTCGACCTACGGCATCAATTTCATCAATAAAAACAATACAAGGTGCATTTTCTTTTGCTT 7088 Query 9421 TTTCAAAGAGATCGCGAACCCTTTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTG 9480 ||| ||| | ||| | ||| ||| || || ||||| |||||||| || ||||| | || Sbjct 7089 TTTTAAATAAATCTCTAACTCTTGATGCTCCTACACCGACAAACATTTCGACAAATTCTG 7148 Query 9481 CGGCGGAACATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAG 9540 | ||| || || || ||||||| |||||| || || ||| || | | || Sbjct 7149 ATCCTGAAATACTGAAAAAAGGTACATTAGCTTCACCTGCTATAGCTTTTGCCAATAAAG 7208 Query 9541 TCTTACCCGTACCTGGCTTACCCGCGAGGAGGGCACCCCGTGGAATCTTGGCGC---CAC 9597 | || || || || || ||| | || | |||| || ||| | || | || Sbjct 7209 TTTTTCCAGTTCCAGGAGGACCAACAAGTAACACACCTGTAGGTATCCTAGCTCCTACAG 7268 Query 9598 TTCCAAAGTATCTCTCAGGTTGCTTGAGAAAATCCACAATCTCTTCCAATTCATCTTTGG 9657 | ||| || || |||||||| | |||| || | ||||| ||||| ||||| | Sbjct 7269 CTGTAAAACAT---TCTGGTTGCTTTAAAAAAGTTACTACTTCTTCAAATTCTTCTTTTG 7325 Query 9658 CGGCGTCAATCCCCTCAACATCGGTAAA 9685 | | ||||| || | ||||| |||| Sbjct 7326 CTTCATCAATTCCAGCTACATCATTAAA 7353 >seq774 Length=913059 Score = 95.1 bits (104), Expect = 1e-14 Identities = 297/450 (66%), Gaps = 20/450 (4%) Strand=Plus/Plus Query 169143 AGAAGACTGGGCCAGAAGTAGTGGATCATATTTAGGATGAGACCCTTGATGTGAGAACCA 169202 ||||||| |||||||||| | || | || | |||||||||||| |||||||| || Sbjct 642050 AGAAGACCCGGCCAGAAGTGATCGAAGAAGTTGATGATGAGACCCTTAATGTGAGAGCCG 642109 Query 169203 TCATTATCGGCATCTGTCATAATCATAAGACGACCATAGCGAAG----TTCAGAAACATC 169258 |||| || ||||| ||| |||| | ||||||||||||| |||| || Sbjct 642110 TCATGGTCTTGATCTGCCATGATCAGGACGTGACCATAGCGAAGAGACTTCA-TGGTTTC 642168 Query 169259 TTGGTAGT-CTTTTCCTTGT--TGAAGACCCAAGATCTTCTTGAGATCGTTGAACTCTTG 169315 || | ||| |||| |||| || ||||| | ||| |||||||| | ||||| ||| | Sbjct 642169 TTTGCAGTATTTTTTATTGTGCTGCAGACCAAGGATTTTCTTGAGGTTGTTGATCTCCTT 642228 Query 169316 GTT-----TGATGTGAGCTGTGCCACTGAAGCGTCGCGGACATTCTTACACTTCCCACGG 169370 ||| |||| || | ||| || || || || |||||| ||| ||||| Sbjct 642229 GTTGTCCATGATTTG-TTTATGC--TTG--GCTTCTCGCACATTCAGCATCTTTCCACGT 642283 Query 169371 AGAGGAAAGACGCCATAGTGATCACGTCCAACGACGGAGAGACCCGCGACCGCAAGGGTT 169430 | ||| |||| || |||| || | ||||| || ||||| || | || || || Sbjct 642284 AACGGATAGACACCGTAGTAGTCCCTCCCAACTACAGAGAGTCCTGAGAAGGCTGTGGCC 642343 Query 169431 TTCGCTGAATCACCCTCCGTGACAATGAGGGTACACTTTCCAGATTGCGCCGTACCCGCC 169490 | || ||||| ||||| || | || ||| || || ||| | | ||||| || Sbjct 642344 ATAGCCGAATCTCCCTCTGTTAAAACGAGCGTGCATTTTGAACCCTCACGTGTACCTGCT 642403 Query 169491 TTGTTTGCGTCGTCCAACTTGGGAATACCAGTAATTTTGGACTTGCGAG-CACCATCGGT 169549 | || ||||||| || || | || || |||| | ||| || | | ||||| || Sbjct 642404 CTATTCGCGTCGTAGAATTTTGTGATTCCGGTAAGCCT-CACTCGCTTGCCTCCATCCGT 642462 Query 169550 TTTCTTGAGTTCCCTCATCTCCTTAAACTT 169579 |||| ||||||| | ||||| ||||| Sbjct 642463 TTTCGCGAGTTCCTTTGATTCCTTGAACTT 642492 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589973970972240