Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_015283.1 Length=176428 Score E Sequences producing significant alignments: (Bits) Value seq926 596 2e-165 seq137 596 2e-165 >seq926 Length=180086 Score = 596 bits (660), Expect = 2e-165 Identities = 731/993 (74%), Gaps = 10/993 (1%) Strand=Plus/Minus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| | || || ||| | ||| | || ||| |||||||||| ||||| || Sbjct 18154 TTCTGTGCTTGGATTACTAGTACTGAAAACCGTCTATATATTGGTTGGTTTGGTGTACTA 18095 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 ||||| ||| || ||||||| || | ||| ||||| ||||||| |||||||||| Sbjct 18094 ATGATACCAACACTACTAACAGCTACATC-TGTATTCATCATTGCATTCGTTGCTGCACC 18036 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || || ||||| || ||| | ||||| || |||||| || || | ||||| || || Sbjct 18035 TCCAGTTGACATCGATGGTATCCGTGAACCAGTTGCAGGTTCTTTACTTTATGGTAATAA 17976 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 |||||| || ||||| || | || ||| ||||| ||| | ||||| || || || Sbjct 17975 CATCATTTCTGGTGCTATTATACCTAGTTCTGCAGCAATTGGTATTCACTTTTATCCTAT 17916 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTA----CCAGTTGG 168785 ||||||||| || | | ||||||||| ||||||||||||| || || | | ||| Sbjct 17915 TTGGGAAGCTGCATCTTTAGATGAGTGGCTATATAATGGTGGCCCATATGAACTAATTGT 17856 Query 168786 TAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCAT 168845 | |||| |||| | | || | | | ||| || ||| | | ||||||||| | Sbjct 17855 T---CTTC-ACTTTATTTTAGGTGTATGTTGCTATATTGGTCGTGAATGGGAATTAAGCT 17800 Query 168846 ACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCAT 168905 || | |||||||| | |||||||||| ||||||| | |||| || ||| | |||||| Sbjct 17799 ACCGTTTAGGTATGCGCCCTTGGATCTCAGTTGCTTTTACAGCTCCTGTAGCAGCAGCAG 17740 Query 168906 TTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAG 168965 |||||||| ||||| || ||| ||||||| || |||||||||||||||||| ||| Sbjct 17739 CAGCAGTATTTCTTGTTTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAG 17680 Query 168966 GAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGC 169025 | || ||||| |||||||| || ||| | || |||||||| ||||| |||||||| |||| Sbjct 17679 GCATCTCTGGTACATTCAATTTTATGCTTGTTTTCCAAGCTGAGCATAACATTCTAATGC 17620 Query 169026 ATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGC 169085 |||| ||||| ||| ||||||||| | || || || ||| |||| || |||| Sbjct 17619 ATCCTTTCCACCAATTAGGTGTAGCAGGTGTATTTGGGGGTTCTTTATTTAGTGCTATGC 17560 Query 169086 ATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACT 169145 ||||||| |||||||| ||| | |||| | ||||| ||||| | ||||| ||| Sbjct 17559 ATGGTTCTCTTGTAACTTCTAGTTTAATTCGTGAGACAACTGAAAACGAATCAGCTAACA 17500 Query 169146 ATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACT 169205 ||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||| Sbjct 17499 ATGGTTACAAGTTTGGTCAAGAAGAAGAAACTTATAATATTGTTGCAGCTCATGGTTACT 17440 Query 169206 TCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCC 169265 | || | ||||| ||||| ||||| ||||| |||||||| | || || |||||| Sbjct 17439 TTGGACGTTTAATTTTCCAATATGCTAGTTTTAACAACTCTCGTTCGCTACATTTCTTCT 17380 Query 169266 TAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCAT 169325 ||| ||| || |||||| || | ||||| || | ||| | | |||| ||||| | Sbjct 17379 TAGGTATGTGGCCTGTTGTAGGTATTTGGTTTACAGCAATGTCTGTTAGTACTATGGCTT 17320 Query 169326 TCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTC 169385 |||| || || || || ||||| || ||||||||||| ||| | || | ||| Sbjct 17319 TCAATTTAAATGGTTTCAACTTCAATCAATCAGTTGTTGATAGCCAAGGCCGTGTAATTA 17260 Query 169386 CTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTA 169445 ||| |||| || | | |||||||| || | |||||||||||||||||||| |||| Sbjct 17259 ATACTTGGGCAGATATTTTAAACAGAGCTAATTTAGGTATGGAAGTAATGCATGAACGTA 17200 Query 169446 ACGCTCACAACTTCCCACTAGACTTAGCATCTG 169478 | || || || || || ||||| ||||| |||| Sbjct 17199 ATGCACATAATTTTCCTCTAGATTTAGCGTCTG 17167 >seq137 Length=19730 Score = 596 bits (660), Expect = 2e-165 Identities = 731/993 (74%), Gaps = 10/993 (1%) Strand=Plus/Plus Query 168491 TTCTGCGAATGGGTAACAAGCACTAACAACAGACTTTATGTTGGTTGGTTCGGTGTCTTA 168550 ||||| | ||| | || || ||| | ||| | || ||| |||||||||| ||||| || Sbjct 16768 TTCTGTGCTTGGATTACTAGTACTGAAAACCGTCTATATATTGGTTGGTTTGGTGTACTA 16827 Query 168551 ATGATCCCATGTTTATTAACAGCAGCAGCATGT-TTCATTGTTGCATTTATTGCTGCACC 168609 ||||| ||| || ||||||| || | ||| ||||| ||||||| |||||||||| Sbjct 16828 ATGATACCAACACTACTAACAGCTACATC-TGTATTCATCATTGCATTCGTTGCTGCACC 16886 Query 168610 ACCTGTCGATATCGACGGAATCAGAGAACCTGTAGCAGGTGCTCTAATGTATGGAAACAA 168669 || || || ||||| || ||| | ||||| || |||||| || || | ||||| || || Sbjct 16887 TCCAGTTGACATCGATGGTATCCGTGAACCAGTTGCAGGTTCTTTACTTTATGGTAATAA 16946 Query 168670 CATCATCTCAGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTACACTTCTACCCAAT 168729 |||||| || ||||| || | || ||| ||||| ||| | ||||| || || || Sbjct 16947 CATCATTTCTGGTGCTATTATACCTAGTTCTGCAGCAATTGGTATTCACTTTTATCCTAT 17006 Query 168730 TTGGGAAGCAGCTACAATCGATGAGTGGTTATATAATGGTGGTCCTTA----CCAGTTGG 168785 ||||||||| || | | ||||||||| ||||||||||||| || || | | ||| Sbjct 17007 TTGGGAAGCTGCATCTTTAGATGAGTGGCTATATAATGGTGGCCCATATGAACTAATTGT 17066 Query 168786 TAATCTTCCACTTCCTAATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAATTATCAT 168845 | |||| |||| | | || | | | ||| || ||| | | ||||||||| | Sbjct 17067 T---CTTC-ACTTTATTTTAGGTGTATGTTGCTATATTGGTCGTGAATGGGAATTAAGCT 17122 Query 168846 ACAGACTAGGTATGAGACCTTGGATCTGTGTTGCTTATTCAGCACCAGTATCTGCAGCAT 168905 || | |||||||| | |||||||||| ||||||| | |||| || ||| | |||||| Sbjct 17123 ACCGTTTAGGTATGCGCCCTTGGATCTCAGTTGCTTTTACAGCTCCTGTAGCAGCAGCAG 17182 Query 168906 TTGCAGTATTCCTTGTATACCCATTTGGTCAGGGTTCTTTCTCTGATGGTATGCCTCTAG 168965 |||||||| ||||| || ||| ||||||| || |||||||||||||||||| ||| Sbjct 17183 CAGCAGTATTTCTTGTTTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAG 17242 Query 168966 GAATTTCTGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGC 169025 | || ||||| |||||||| || ||| | || |||||||| ||||| |||||||| |||| Sbjct 17243 GCATCTCTGGTACATTCAATTTTATGCTTGTTTTCCAAGCTGAGCATAACATTCTAATGC 17302 Query 169026 ATCCCTTCCATATGGCAGGAGTAGCAGGTATGTTCGGTGGATCTCTATTCTCCGCAATGC 169085 |||| ||||| ||| ||||||||| | || || || ||| |||| || |||| Sbjct 17303 ATCCTTTCCACCAATTAGGTGTAGCAGGTGTATTTGGGGGTTCTTTATTTAGTGCTATGC 17362 Query 169086 ATGGTTCACTTGTAACATCTTCTCTAATCAGAGAGACTACTGAGGAAGAATCTCAGAACT 169145 ||||||| |||||||| ||| | |||| | ||||| ||||| | ||||| ||| Sbjct 17363 ATGGTTCTCTTGTAACTTCTAGTTTAATTCGTGAGACAACTGAAAACGAATCAGCTAACA 17422 Query 169146 ATGGTTACAAGTTCGGTCAAGAAGAAGAAACCTATAATATTGTTGCAGCACATGGATACT 169205 ||||||||||||| ||||||||||||||||| ||||||||||||||||| ||||| |||| Sbjct 17423 ATGGTTACAAGTTTGGTCAAGAAGAAGAAACTTATAATATTGTTGCAGCTCATGGTTACT 17482 Query 169206 TCGGTAGATTAATCTTCCAGTATGCAAGTTTCAACAACTCAAGAAGTCTTCACTTCTTCC 169265 | || | ||||| ||||| ||||| ||||| |||||||| | || || |||||| Sbjct 17483 TTGGACGTTTAATTTTCCAATATGCTAGTTTTAACAACTCTCGTTCGCTACATTTCTTCT 17542 Query 169266 TAGCAGTGTTCCCAGTTGTATGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCAT 169325 ||| ||| || |||||| || | ||||| || | ||| | | |||| ||||| | Sbjct 17543 TAGGTATGTGGCCTGTTGTAGGTATTTGGTTTACAGCAATGTCTGTTAGTACTATGGCTT 17602 Query 169326 TCAACTTGAACGGATTTAACTTTAACCAATCAGTTGTAGATGTTAACGGTAAGATCATTC 169385 |||| || || || || ||||| || ||||||||||| ||| | || | ||| Sbjct 17603 TCAATTTAAATGGTTTCAACTTCAATCAATCAGTTGTTGATAGCCAAGGCCGTGTAATTA 17662 Query 169386 CTACATGGGGTGACGTACTTAACAGAGCAAACCTTGGTATGGAAGTAATGCATGAGCGTA 169445 ||| |||| || | | |||||||| || | |||||||||||||||||||| |||| Sbjct 17663 ATACTTGGGCAGATATTTTAAACAGAGCTAATTTAGGTATGGAAGTAATGCATGAACGTA 17722 Query 169446 ACGCTCACAACTTCCCACTAGACTTAGCATCTG 169478 | || || || || || ||||| ||||| |||| Sbjct 17723 ATGCACATAATTTTCCTCTAGATTTAGCGTCTG 17755 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 564435066588480