Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_015287.1 Length=232878 Score E Sequences producing significant alignments: (Bits) Value seq926 551 8e-152 seq137 551 8e-152 >seq926 Length=180086 Score = 551 bits (610), Expect = 8e-152 Identities = 737/1021 (72%), Gaps = 4/1021 (0%) Strand=Plus/Minus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 || |||| ||| ||||| |||||| || ||| | || |||||||||||||||| || Sbjct 18154 TTCTGTGCTTGGATTACTAGTACTGAAAACCGTCTATATATTGGTTGGTTTGGTGTACTA 18095 Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCT 215413 ||||| || || || ||||||| || |||||| | |||||| | ||||||||| Sbjct 18094 ATGATACCAACACTACTAACAGCTACATCTGTATTCATCATTGCATTCGTTGCTGCACCT 18035 Query 215414 CCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAAC 215473 || || || ||||| || ||| | || |||||||| ||||||||| | |||||||| ||| Sbjct 18034 CCAGTTGACATCGATGGTATCCGTGAACCAGTTGCAGGTTCTTTACTTTATGGTAATAAC 17975 Query 215474 ATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATC 215533 ||||| ||||||||| || |||||||||| ||||| || | ||||| || ||||| Sbjct 17974 ATCATTTCTGGTGCTATTATACCTAGTTCTGCAGCAATTGGTATTCACTTTTATCCTATT 17915 Query 215534 TGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATC 215593 |||||||| ||| | | || || ||||| || |||||||| || | |||| || | Sbjct 17914 TGGGAAGCTGCATCTTTAGATGAGTGGCTATATAATGGTGGCCCATATGAACTAATTGTT 17855 Query 215594 TTCCACTTCCTCATTGGTATTTCT-GC-ATACTGCGGAAGACAGTGGGAACTTTCTTACA 215651 | ||||| | | ||| | | | || ||| || | | | |||||| | ||| Sbjct 17854 CTTCACTTTATTTTAGGTGTATGTTGCTATATTG--GTCGTGAATGGGAATTAAGCTACC 17797 Query 215652 GATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTG 215711 | ||||||||| | |||||||||| ||||||| | || |||||| | || || | Sbjct 17796 GTTTAGGTATGCGCCCTTGGATCTCAGTTGCTTTTACAGCTCCTGTAGCAGCAGCAGCAG 17737 Query 215712 CAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAA 215771 ||||||| ||||| |||||| | ||||| || |||||||||| |||||| | || | Sbjct 17736 CAGTATTTCTTGTTTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGCA 17677 Query 215772 TCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACC 215831 ||||||| |||||||| | ||| |||||||||| |||||||| |||||||| ||||| | Sbjct 17676 TCTCTGGTACATTCAATTTTATGCTTGTTTTCCAAGCTGAGCATAACATTCTAATGCATC 17617 Query 215832 CATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACG 215891 | |||||| |||||||| || ||||| || || ||||| || || ||| ||||| | Sbjct 17616 CTTTCCACCAATTAGGTGTAGCAGGTGTATTTGGGGGTTCTTTATTTAGTGCTATGCATG 17557 Query 215892 GTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACG 215951 |||| ||||| || ||| | |||| | ||||||||||| | ||||| ||| | | Sbjct 17556 GTTCTCTTGTAACTTCTAGTTTAATTCGTGAGACAACTGAAAACGAATCAGCTAACAATG 17497 Query 215952 GTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTG 216011 |||||||||| || ||||| || ||||| || || || || || || || |||||||||| Sbjct 17496 GTTACAAGTTTGGTCAAGAAGAAGAAACTTATAATATTGTTGCAGCTCATGGTTACTTTG 17437 Query 216012 GTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTG 216071 | || | || |||||||| || ||| |||||||| | || || |||||| | | Sbjct 17436 GACGTTTAATTTTCCAATATGCTAGTTTTAACAACTCTCGTTCGCTACATTTCTTCTTAG 17377 Query 216072 CAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCA 216131 | |||||| | |||| ||| || |||||| ||| |||||||| |||| Sbjct 17376 GTATGTGGCCTGTTGTAGGTATTTGGTTTACAGCAATGTCTGTTAGTACTATGGCTTTCA 17317 Query 216132 ACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTA 216191 | | || |||||||||||||| || || || || || || || ||| || Sbjct 17316 ATTTAAATGGTTTCAACTTCAATCAATCAGTTGTTGATAGCCAAGGCCGTGTAATTAATA 17257 Query 216192 CTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACG 216251 |||||||||| || | |||||||| | ||||||||||||||||| || ||||| | Sbjct 17256 CTTGGGCAGATATTTTAAACAGAGCTAATTTAGGTATGGAAGTAATGCATGAACGTAATG 17197 Query 216252 CTCACAACTTCCCATTAGACTTGGCTGCTGCTGAATCAACACCAGTTGCTTTAACTGCAC 216311 | || || || || |||| || || ||| | | ||| |||||| ||| || ||||| Sbjct 17196 CACATAATTTTCCTCTAGATTTAGCGTCTGGTAACTCATTACCAGTAGCTCTAGTTGCAC 17137 Query 216312 C 216312 | Sbjct 17136 C 17136 Score = 89.7 bits (98), Expect = 8e-13 Identities = 73/85 (86%), Gaps = 3/85 (4%) Strand=Plus/Plus Query 216654 GGAGTGTGGTGGAATCGGTAGACACACCAGACTTAAAATCTGTTGA-CAGCAAT-GTCGT 216711 || |||||||||||| |||||||||| |||| |||||||||||||| | ||| ||||| Sbjct 147453 GGGGTGTGGTGGAAT-GGTAGACACAACAGATTTAAAATCTGTTGATCTTTAATGGTCGT 147511 Query 216712 GGGGGTTCAAGTCCCCCCACTCCCA 216736 | ||||||||||||| |||| |||| Sbjct 147512 GAGGGTTCAAGTCCCTCCACCCCCA 147536 >seq137 Length=19730 Score = 551 bits (610), Expect = 8e-152 Identities = 737/1021 (72%), Gaps = 4/1021 (0%) Strand=Plus/Plus Query 215294 TTTTGTGAGTGGGTTACTTCTACTGACAATCGTATCTACGTTGGTTGGTTTGGTGTCCTC 215353 || |||| ||| ||||| |||||| || ||| | || |||||||||||||||| || Sbjct 16768 TTCTGTGCTTGGATTACTAGTACTGAAAACCGTCTATATATTGGTTGGTTTGGTGTACTA 16827 Query 215354 ATGATTCCTTGCCTCCTCGCAGCTACCACTTGTTTCATCGTAGCATTCATCGCTGCACCT 215413 ||||| || || || ||||||| || |||||| | |||||| | ||||||||| Sbjct 16828 ATGATACCAACACTACTAACAGCTACATCTGTATTCATCATTGCATTCGTTGCTGCACCT 16887 Query 215414 CCTGTCGATATCGACGGAATCAGAGAGCCAGTTGCTGGTTCTTTAATGTATGGTAACAAC 215473 || || || ||||| || ||| | || |||||||| ||||||||| | |||||||| ||| Sbjct 16888 CCAGTTGACATCGATGGTATCCGTGAACCAGTTGCAGGTTCTTTACTTTATGGTAATAAC 16947 Query 215474 ATCATCTCTGGTGCTGTTGTACCTAGTTCAAACGCAATCGGATTACACTTCTACCCTATC 215533 ||||| ||||||||| || |||||||||| ||||| || | ||||| || ||||| Sbjct 16948 ATCATTTCTGGTGCTATTATACCTAGTTCTGCAGCAATTGGTATTCACTTTTATCCTATT 17007 Query 215534 TGGGAAGCAGCAACAGTTGACGAATGGCTCTACAATGGTGGACCTTTCCAACTGGTTATC 215593 |||||||| ||| | | || || ||||| || |||||||| || | |||| || | Sbjct 17008 TGGGAAGCTGCATCTTTAGATGAGTGGCTATATAATGGTGGCCCATATGAACTAATTGTT 17067 Query 215594 TTCCACTTCCTCATTGGTATTTCT-GC-ATACTGCGGAAGACAGTGGGAACTTTCTTACA 215651 | ||||| | | ||| | | | || ||| || | | | |||||| | ||| Sbjct 17068 CTTCACTTTATTTTAGGTGTATGTTGCTATATTG--GTCGTGAATGGGAATTAAGCTACC 17125 Query 215652 GATTAGGTATGAGACCTTGGATCTGTGTTGCTTACTCCGCACCTGTATCTGCTGCCTTTG 215711 | ||||||||| | |||||||||| ||||||| | || |||||| | || || | Sbjct 17126 GTTTAGGTATGCGCCCTTGGATCTCAGTTGCTTTTACAGCTCCTGTAGCAGCAGCAGCAG 17185 Query 215712 CAGTATTCCTTGTGTATCCATTCGGTCAGGGTTCTTTCTCTGATGCTATGCCACTTGGAA 215771 ||||||| ||||| |||||| | ||||| || |||||||||| |||||| | || | Sbjct 17186 CAGTATTTCTTGTTTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGCA 17245 Query 215772 TCTCTGGAACATTCAACTACATGTTTGTTTTCCAGGCTGAGCACAACATTCTGATGCACC 215831 ||||||| |||||||| | ||| |||||||||| |||||||| |||||||| ||||| | Sbjct 17246 TCTCTGGTACATTCAATTTTATGCTTGTTTTCCAAGCTGAGCATAACATTCTAATGCATC 17305 Query 215832 CATTCCACATGTTAGGTGTGGCTGGTGTCTTCGGTGGTTCATTGTTCTCTGCAATGCACG 215891 | |||||| |||||||| || ||||| || || ||||| || || ||| ||||| | Sbjct 17306 CTTTCCACCAATTAGGTGTAGCAGGTGTATTTGGGGGTTCTTTATTTAGTGCTATGCATG 17365 Query 215892 GTTCACTTGTTACATCTTCTCTAATCAGAGAGACAACTGAGCAAGAATCTCAGAACTACG 215951 |||| ||||| || ||| | |||| | ||||||||||| | ||||| ||| | | Sbjct 17366 GTTCTCTTGTAACTTCTAGTTTAATTCGTGAGACAACTGAAAACGAATCAGCTAACAATG 17425 Query 215952 GTTACAAGTTCGGACAAGAGGAGGAAACATACAACATCGTAGCTGCACACGGTTACTTTG 216011 |||||||||| || ||||| || ||||| || || || || || || || |||||||||| Sbjct 17426 GTTACAAGTTTGGTCAAGAAGAAGAAACTTATAATATTGTTGCAGCTCATGGTTACTTTG 17485 Query 216012 GTCGCCTCATCTTCCAATACGCATCTTTCAACAACTCAAGAAGTCTTCACTTCTTCCTTG 216071 | || | || |||||||| || ||| |||||||| | || || |||||| | | Sbjct 17486 GACGTTTAATTTTCCAATATGCTAGTTTTAACAACTCTCGTTCGCTACATTTCTTCTTAG 17545 Query 216072 CAGCATTCCCTGTTATTTGTATCTGGGCAACTGCAATGGGTGTCTCAACTATGGCGTTCA 216131 | |||||| | |||| ||| || |||||| ||| |||||||| |||| Sbjct 17546 GTATGTGGCCTGTTGTAGGTATTTGGTTTACAGCAATGTCTGTTAGTACTATGGCTTTCA 17605 Query 216132 ACCTTAACGGTTTCAACTTCAACCAGTCTGTCGTAGACGCATCTGGTAAAGTTATTCCTA 216191 | | || |||||||||||||| || || || || || || || ||| || Sbjct 17606 ATTTAAATGGTTTCAACTTCAATCAATCAGTTGTTGATAGCCAAGGCCGTGTAATTAATA 17665 Query 216192 CTTGGGCAGACGTTCTTAACAGAGCAGGACTTGGTATGGAAGTAATGCACGAGCGTAACG 216251 |||||||||| || | |||||||| | ||||||||||||||||| || ||||| | Sbjct 17666 CTTGGGCAGATATTTTAAACAGAGCTAATTTAGGTATGGAAGTAATGCATGAACGTAATG 17725 Query 216252 CTCACAACTTCCCATTAGACTTGGCTGCTGCTGAATCAACACCAGTTGCTTTAACTGCAC 216311 | || || || || |||| || || ||| | | ||| |||||| ||| || ||||| Sbjct 17726 CACATAATTTTCCTCTAGATTTAGCGTCTGGTAACTCATTACCAGTAGCTCTAGTTGCAC 17785 Query 216312 C 216312 | Sbjct 17786 C 17786 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 745072975680480