Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_015290.1 Length=182180 Score E Sequences producing significant alignments: (Bits) Value seq926 565 3e-156 seq137 565 3e-156 >seq926 Length=180086 Score = 565 bits (626), Expect = 3e-156 Identities = 738/1021 (72%), Gaps = 0/1021 (0%) Strand=Plus/Minus Query 169695 TGATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGAT 169754 || |||| | || || || | ||||| | ||| |||||||||| ||||| | ||||| Sbjct 18149 TGCTTGGATTACTAGTACTGAAAACCGTCTATATATTGGTTGGTTTGGTGTACTAATGAT 18090 Query 169755 CCCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGT 169814 ||| ||| || |||| || | || ||| |||| ||| | || || || || || Sbjct 18089 ACCAACACTACTAACAGCTACATCTGTATTCATCATTGCATTCGTTGCTGCACCTCCAGT 18030 Query 169815 GGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCAT 169874 ||||||||||| ||| | ||||| || |||||||| || | |||||||| |||||||| Sbjct 18029 TGACATCGATGGTATCCGTGAACCAGTTGCAGGTTCTTTACTTTATGGTAATAACATCAT 17970 Query 169875 CTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGA 169934 |||||||| || | || ||| ||||| ||| | ||||| |||||||||||||| Sbjct 17969 TTCTGGTGCTATTATACCTAGTTCTGCAGCAATTGGTATTCACTTTTATCCTATTTGGGA 17910 Query 169935 AGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCA 169994 ||| ||| || ||||||||||| | ||||| ||||| || ||| || || || | | || Sbjct 17909 AGCTGCATCTTTAGATGAGTGGCTATATAATGGTGGCCCATATGAACTAATTGTTCTTCA 17850 Query 169995 CTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGG 170054 ||| || | || | | | ||| || ||| | | |||||| || ||||||||||| Sbjct 17849 CTTTATTTTAGGTGTATGTTGCTATATTGGTCGTGAATGGGAATTAAGCTACCGTTTAGG 17790 Query 170055 TATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATT 170114 |||||| |||||||||| || || | | | ||||| || |||||||| || ||||| Sbjct 17789 TATGCGCCCTTGGATCTCAGTTGCTTTTACAGCTCCTGTAGCAGCAGCAGCAGCAGTATT 17730 Query 170115 CTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGG 170174 | || ||||| | ||||| ||| ||||| || || |||||| |||| ||||| || Sbjct 17729 TCTTGTTTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGCATCTCTGG 17670 Query 170175 TACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCA 170234 |||||| || || ||| | || |||||||| ||||| |||||||| ||||| || ||||| Sbjct 17669 TACATTCAATTTTATGCTTGTTTTCCAAGCTGAGCATAACATTCTAATGCATCCTTTCCA 17610 Query 170235 TATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACT 170294 ||| || || ||| | || || || | | || || ||||| ||||| || Sbjct 17609 CCAATTAGGTGTAGCAGGTGTATTTGGGGGTTCTTTATTTAGTGCTATGCATGGTTCTCT 17550 Query 170295 TGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAA 170354 |||||| ||| | |||| | |||||||| || ||||| ||| ||| |||| ||||| Sbjct 17549 TGTAACTTCTAGTTTAATTCGTGAGACAACTGAAAACGAATCAGCTAACAATGGTTACAA 17490 Query 170355 ATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACT 170414 || || |||||||||||||| || || ||||||||||| ||||| |||||||| | | Sbjct 17489 GTTTGGTCAAGAAGAAGAAACTTATAATATTGTTGCAGCTCATGGTTACTTTGGACGTTT 17430 Query 170415 TATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATT 170474 || |||||||||||||| |||||||| |||| || || |||||| | | || | Sbjct 17429 AATTTTCCAATATGCTAGTTTTAACAACTCTCGTTCGCTACATTTCTTCTTAGGTATGTG 17370 Query 170475 CCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAA 170534 ||||| ||| | || ||||| || ||||| | || | || ||||| || || | || Sbjct 17369 GCCTGTTGTAGGTATTTGGTTTACAGCAATGTCTGTTAGTACTATGGCTTTCAATTTAAA 17310 Query 170535 TGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGC 170594 ||| || |||||||| || ||| | || ||| | || ||| || ||| ||||| Sbjct 17309 TGGTTTCAACTTCAATCAATCAGTTGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGC 17250 Query 170595 AGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAA 170654 ||| || | |||||||| || |||||||||||||||||||||| ||||||||||| || Sbjct 17249 AGATATTTTAAACAGAGCTAATTTAGGTATGGAAGTAATGCATGAACGTAATGCACATAA 17190 Query 170655 CTTCCCACTTGACTTGGCAACTGCTGAGACATCTGAAGTTGCATTAATTGCTCCTTCTGT 170714 || || || || || || ||| | | ||| ||| || || |||| || |||| Sbjct 17189 TTTTCCTCTAGATTTAGCGTCTGGTAACTCATTACCAGTAGCTCTAGTTGCACCAGCTGT 17130 Query 170715 T 170715 | Sbjct 17129 T 17129 >seq137 Length=19730 Score = 565 bits (626), Expect = 3e-156 Identities = 738/1021 (72%), Gaps = 0/1021 (0%) Strand=Plus/Plus Query 169695 TGATTGGGTAACAAGCACAAACAACCGCATCTATGTTGGTTGGTTCGGTGTCTTGATGAT 169754 || |||| | || || || | ||||| | ||| |||||||||| ||||| | ||||| Sbjct 16773 TGCTTGGATTACTAGTACTGAAAACCGTCTATATATTGGTTGGTTTGGTGTACTAATGAT 16832 Query 169755 CCCATGTCTATTAGCAGCAGCAACCTGCTTTATCGTTGCTTTCATCGCAGCTCCACCTGT 169814 ||| ||| || |||| || | || ||| |||| ||| | || || || || || Sbjct 16833 ACCAACACTACTAACAGCTACATCTGTATTCATCATTGCATTCGTTGCTGCACCTCCAGT 16892 Query 169815 GGACATCGATGGAATCAGAGAACCTGTAGCAGGTTCATTCATGTATGGTAACAACATCAT 169874 ||||||||||| ||| | ||||| || |||||||| || | |||||||| |||||||| Sbjct 16893 TGACATCGATGGTATCCGTGAACCAGTTGCAGGTTCTTTACTTTATGGTAATAACATCAT 16952 Query 169875 CTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTCTCCACTTCTATCCTATTTGGGA 169934 |||||||| || | || ||| ||||| ||| | ||||| |||||||||||||| Sbjct 16953 TTCTGGTGCTATTATACCTAGTTCTGCAGCAATTGGTATTCACTTTTATCCTATTTGGGA 17012 Query 169935 AGCAGCAACTCTAGATGAGTGGTTGTATAACGGTGGTCCTTATCAATTAGTTATCTTCCA 169994 ||| ||| || ||||||||||| | ||||| ||||| || ||| || || || | | || Sbjct 17013 AGCTGCATCTTTAGATGAGTGGCTATATAATGGTGGCCCATATGAACTAATTGTTCTTCA 17072 Query 169995 CTTCCTTATCGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACCGTTTAGG 170054 ||| || | || | | | ||| || ||| | | |||||| || ||||||||||| Sbjct 17073 CTTTATTTTAGGTGTATGTTGCTATATTGGTCGTGAATGGGAATTAAGCTACCGTTTAGG 17132 Query 170055 TATGCGTCCTTGGATCTGTGTAGCATATTCTGCTCCAGTGTCAGCAGCATTCGCTGTATT 170114 |||||| |||||||||| || || | | | ||||| || |||||||| || ||||| Sbjct 17133 TATGCGCCCTTGGATCTCAGTTGCTTTTACAGCTCCTGTAGCAGCAGCAGCAGCAGTATT 17192 Query 170115 CTTAGTGTATCCTTTCGGTCAGGGATCTTTCTCAGACGGAATGCCTCTAGGTATCTCAGG 170174 | || ||||| | ||||| ||| ||||| || || |||||| |||| ||||| || Sbjct 17193 TCTTGTTTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGCCTTTAGGCATCTCTGG 17252 Query 170175 TACATTTAACTTCATGTTCGTATTCCAAGCAGAGCACAACATTCTTATGCACCCATTCCA 170234 |||||| || || ||| | || |||||||| ||||| |||||||| ||||| || ||||| Sbjct 17253 TACATTCAATTTTATGCTTGTTTTCCAAGCTGAGCATAACATTCTAATGCATCCTTTCCA 17312 Query 170235 TATGGCAGGGGTTGCTGGTATGTTCGGAGGAGCACTCTTCTCAGCAATGCACGGTTCACT 170294 ||| || || ||| | || || || | | || || ||||| ||||| || Sbjct 17313 CCAATTAGGTGTAGCAGGTGTATTTGGGGGTTCTTTATTTAGTGCTATGCATGGTTCTCT 17372 Query 170295 TGTAACATCTTCTCTAATCAGAGAGACAACAGATAACGAGTCACAGAACTATGGATACAA 170354 |||||| ||| | |||| | |||||||| || ||||| ||| ||| |||| ||||| Sbjct 17373 TGTAACTTCTAGTTTAATTCGTGAGACAACTGAAAACGAATCAGCTAACAATGGTTACAA 17432 Query 170355 ATTCGGACAAGAAGAAGAAACATACAACATTGTTGCAGCACATGGATACTTTGGTAGACT 170414 || || |||||||||||||| || || ||||||||||| ||||| |||||||| | | Sbjct 17433 GTTTGGTCAAGAAGAAGAAACTTATAATATTGTTGCAGCTCATGGTTACTTTGGACGTTT 17492 Query 170415 TATCTTCCAATATGCTAGCTTTAACAATAGTCGTAGTCTTCACTTCTTCCTTGCTACATT 170474 || |||||||||||||| |||||||| |||| || || |||||| | | || | Sbjct 17493 AATTTTCCAATATGCTAGTTTTAACAACTCTCGTTCGCTACATTTCTTCTTAGGTATGTG 17552 Query 170475 CCCTGTAGTATGCATCTGGTTAACTTCAATGGGTATTTGCACAATGGCATTTAACCTTAA 170534 ||||| ||| | || ||||| || ||||| | || | || ||||| || || | || Sbjct 17553 GCCTGTTGTAGGTATTTGGTTTACAGCAATGTCTGTTAGTACTATGGCTTTCAATTTAAA 17612 Query 170535 TGGATTTAACTTCAACCAGTCAATCGTAGATGGATCTGGTAAAGTAGTTCCTACATGGGC 170594 ||| || |||||||| || ||| | || ||| | || ||| || ||| ||||| Sbjct 17613 TGGTTTCAACTTCAATCAATCAGTTGTTGATAGCCAAGGCCGTGTAATTAATACTTGGGC 17672 Query 170595 AGACGTTCTTAACAGAGCAAACCTAGGTATGGAAGTAATGCATGAGCGTAATGCACACAA 170654 ||| || | |||||||| || |||||||||||||||||||||| ||||||||||| || Sbjct 17673 AGATATTTTAAACAGAGCTAATTTAGGTATGGAAGTAATGCATGAACGTAATGCACATAA 17732 Query 170655 CTTCCCACTTGACTTGGCAACTGCTGAGACATCTGAAGTTGCATTAATTGCTCCTTCTGT 170714 || || || || || || ||| | | ||| ||| || || |||| || |||| Sbjct 17733 TTTTCCTCTAGATTTAGCGTCTGGTAACTCATTACCAGTAGCTCTAGTTGCACCAGCTGT 17792 Query 170715 T 170715 | Sbjct 17793 T 17793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582841253534400