Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq135 147 5e-30 seq210 136 9e-27 >seq135 Length=363025 Score = 147 bits (162), Expect = 5e-30 Identities = 155/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 ||| |||||||| || || ||||| |||||||||| ||| || | || || |||||||| Sbjct 298880 GTGGAGAGTGGATTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCGAGCTG 298939 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| | || || ||||| || || || ||||| ||||| ||||| || Sbjct 298940 CTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGAATCTT 298999 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||| ||||||||||||||||||||| || || || ||||| | ||||| || || Sbjct 299000 AGTCTTCACGTTCTCAATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTGCCGGT 299059 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 | || || ||||| | ||||| Sbjct 299060 GAGGGTCTTGACGAAAATCTGCAT 299083 Score = 141 bits (156), Expect = 2e-28 Identities = 153/203 (75%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 194938 TGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGC 194997 |||||||| ||||| ||||| || ||||| || | ||||| | || || ||||||||| Sbjct 298653 TGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGACCGTCCTCGAGCTGC 298712 Query 194998 TTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTT 195057 || || ||||||||||| | || ||||| || || ||||| || ||||| ||||| || Sbjct 298713 TTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTGAATCTTC 298772 Query 195058 TGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTC 195117 ||| || |||||||| |||||||| || || || ||||| | |||||||| ||| Sbjct 298773 GTCTTCACATTCTCAATAGTGTCCGAGGCCTCAACCTCCAGGGTGATAGTCTTTCCAGTC 298832 Query 195118 AAAGTTTTTACGAACACTTGCAT 195140 || || || || || | ||||| Sbjct 298833 AAGGTCTTGACAAAAATCTGCAT 298855 Score = 125 bits (138), Expect = 2e-23 Identities = 153/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| ||||| || || || ||||| |||| || || | || ||||| Sbjct 299103 ACGAGATGGAGAGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGGGTGCGTCCGTCTTCA 299162 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| |||||||| || | || ||||| || || |||||||| ||||| ||| Sbjct 299163 AGCTGCTTACCGGCGAAGATGAGCCTCTGCTGGTCAGGGGGGATGCCTTCCTTGTCCTGA 299222 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| || ||||| ||||||||||| || || || || || | ||||| Sbjct 299223 ATCTTCGTCTTCACATTCTCGATGGTGTCCGAGGACTCGACCTCGAGAGTGATGGTCTTC 299282 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || ||||| | ||||| Sbjct 299283 CCGGTGAGGGTCTTGACGAAAATCTGCAT 299311 Score = 122 bits (134), Expect = 2e-22 Identities = 153/210 (73%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || || || || || || ||||| ||| | || | ||||| ||| Sbjct 298419 ACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGTCCATCCTCG 298478 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| | || ||||| || || || || || || || ||| Sbjct 298479 AGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGTGGGATACCCTCCTTATCCTGA 298538 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| ||||||||||| ||||||||| || || |||||||||| ||||| Sbjct 298539 ATCTTAGTCTTCACGTTCTCAATAGTGTCCGAAGACTCGACCTCAAGGGTAATTGTCTTG 298598 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCATT 195141 ||||| | || || || || | |||||| Sbjct 298599 CCTGTTAGCGTCTTGACAAAAATCTGCATT 298628 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || ||||| || || || || || ||||| ||| | || | |||||| ||| Sbjct 297963 ACCAGATGGAGAGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCCTCG 298022 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| ||||||||||| | || || || || || || || || ||||| ||| Sbjct 298023 AGCTGCTTACCAGCGAAGATAAGCCTCTGCTGATCAGGTGGGATACCCTCCTTGTCCTGA 298082 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| |||||||||||| || || || ||||| | ||||| Sbjct 298083 ATCTTAGTCTTCACGTTCTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTG 298142 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 298143 CCCGTGAGGGTCTTGACAAAGATCTGCAT 298171 Score = 120 bits (132), Expect = 7e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || || || || || || ||||| ||| | || | |||||| ||| Sbjct 298191 ACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCCTCG 298250 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| | || ||||| || || || || || ||||| ||| Sbjct 298251 AGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGA 298310 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| |||||||||||| || || |||||||| | ||||| Sbjct 298311 ATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTG 298370 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 298371 CCCGTGAGGGTCTTGACAAAGATCTGCAT 298399 Score = 111 bits (122), Expect = 3e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || || || || || || || || || || ||||| ||| | || | |||||| ||| Sbjct 297735 ACCAGATGGAGGGTAGATTCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCCTCG 297794 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || ||||||||||| | || || || || || || || || ||||| ||| Sbjct 297795 AGCTGCTTGCCGGCGAAGATAAGCCTCTGCTGATCAGGCGGGATACCCTCCTTGTCCTGA 297854 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||| |||||||| |||||||||||| || || || ||||| | ||||| Sbjct 297855 ATCTTAGTCTTAACGTTCTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTG 297914 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || || || || | ||||| Sbjct 297915 CCCGTGAGGGTCTTGACAAAGATCTGCAT 297943 >seq210 Length=341256 Score = 136 bits (150), Expect = 9e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 194928 CAAAACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATC 194987 ||| |||||||||||||| || || || || || ||||| || | ||||| | |||| Sbjct 96376 CAACACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCTGACAGAGTGCGATCATC 96435 Query 194988 TTCGAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTC 195047 ||||||||||| || |||||||| || || || ||||| ||||||||||| |||||||| Sbjct 96436 CTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATGCCCTCTTTGTC 96495 Query 195048 TTGAATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGT 195107 || || || ||| || ||| | ||| | || || || || ||||| |||| ||| Sbjct 96496 CTGGATCTTAGTCTTCACATTCGCGATGTTATCAGAGGCCTCGACCTCAAGAGTAATCGT 96555 Query 195108 CTTTCCTGTCAAAGTTTTTACGAACACTTGCATTT 195142 ||| || || | || || || || | ||||||| Sbjct 96556 CTTACCCGTGAGGGTCTTCACAAAGATCTGCATTT 96590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109468436694242