Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_015398.1 Length=101487 Score E Sequences producing significant alignments: (Bits) Value seq210 96.9 2e-15 seq135 93.3 3e-14 >seq210 Length=341256 Score = 96.9 bits (106), Expect = 2e-15 Identities = 151/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828 ||| || | ||||| || ||| ||||| ||||| ||||| || || | || ||||| Sbjct 96376 CAACACAAGGTGAAGAGTCGATTCCTTCTGGATGTTGTAGTCTGACAGAGTGCGATCATC 96435 Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888 || ||||| || || || || || || || |||||||| | || | ||||| ||||| Sbjct 96436 CTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGAGGAATGCCCTCTTTGTC 96495 Query 34889 GCTAATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGT 34948 ||||| || || || || ||| |||||| || || | || || || Sbjct 96496 CTGGATCTTAGTCTTCACATTCGCGATGTTATCAGAGGCCTCGACCTCAAGAGTAATCGT 96555 Query 34949 TTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984 || |||||||| |||||||||||||||||||| || Sbjct 96556 CTTACCCGTGAGGGTCTTCACAAAGATCTGCATTTT 96591 >seq135 Length=363025 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 34773 ACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCC 34832 |||||||| | ||| ||| ||||||||||| || || |||||| | || | || || Sbjct 298875 ACCAAGTGGAGAGTGGATTCCTTCTGAATGTTGTAATCGGAAAGGGTGCGGCCGTCCTCG 298934 Query 34833 AGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTA 34892 ||||| ||||| || || || | || |||||||| |||| | || |||||||| | Sbjct 298935 AGCTGCTTTCCAGCGAAGATCAAACGCTGCTGGTCAGGCGGGATTCCTTCCTTGTCCTGA 298994 Query 34893 ATCTTCTGTTTGACGGATGCTATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTT 34952 ||||| || ||| | || | || | ||| || || | ||| ||||| || Sbjct 298995 ATCTTAGTCTTCACGTTCTCAATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTG 299054 Query 34953 CCCGTGAGAGTCTTCACAAAGATCTGCAT 34981 || ||||| ||||| || || |||||||| Sbjct 299055 CCGGTGAGGGTCTTGACGAAAATCTGCAT 299083 Score = 87.8 bits (96), Expect = 1e-12 Identities = 139/197 (71%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | | || |||| || ||||| || ||||| || Sbjct 298208 TTCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCCTCGAGCTGCTTGCCGGCGAA 298267 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | |||||||| |||| | ||||||||||| |||||| || ||| Sbjct 298268 GATAAGCCTCTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGAATCTTAGTCTTAACGT- 298326 Query 34910 TGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | ||||| | ||| | ||| || || | ||| ||||| || |||||||| |||| Sbjct 298327 ---TCTCGATGGTGTCCGAAGACTCGACCTCAAGGGTGATGGTCTTGCCCGTGAGGGTCT 298383 Query 34966 TCACAAAGATCTGCATA 34982 | ||||||||||||||| Sbjct 298384 TGACAAAGATCTGCATA 298400 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/213 (69%), Gaps = 4/213 (2%) Strand=Plus/Plus Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831 |||||| |||| || || || || ||||| ||||| || || | || | || || Sbjct 298646 AACCAAATGAAGAGTAGACTCCTTTTGGATGTTGTAGTCAGAGAGAGTGCGACCGTCCTC 298705 Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891 ||||| || || || || || || | |||||||| |||| | ||||||||||| Sbjct 298706 GAGCTGCTTGCCAGCGAAGATAAGCCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 298765 Query 34892 AATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTT 34949 ||||||| || || || || || | || ||||||||| || | ||| || || Sbjct 298766 AATCTTCGTCTTCAC--ATTCTCAATAGTGTCCGAGGCCTCAACCTCCAGGGTGATAGTC 298823 Query 34950 TTTCCCGTGAGAGTCTTCACAAAGATCTGCATA 34982 ||||| || | ||||| ||||| ||||||||| Sbjct 298824 TTTCCAGTCAAGGTCTTGACAAAAATCTGCATA 298856 Score = 84.2 bits (92), Expect = 1e-11 Identities = 138/197 (70%), Gaps = 8/197 (4%) Strand=Plus/Plus Query 34790 TTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAA 34849 ||| ||||| ||||| ||||| | | || |||| || ||||| || ||||| || Sbjct 297752 TTCCTTCTGGATGTTGTAGTCGTTCAACGTACGCCCATCCTCGAGCTGCTTGCCGGCGAA 297811 Query 34850 TATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGA 34909 || || | ||||| || |||| | ||||||||||| |||||| || ||| Sbjct 297812 GATAAGCCTCTGCTGATCAGGCGGGATACCCTCCTTGTCCTGAATCTTAGTCTTAACGT- 297870 Query 34910 TGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCT 34965 | ||||| | ||| | ||| || || | ||| ||||| || |||||||| |||| Sbjct 297871 ---TCTCGATGGTGTCCGAAGACTCGACCTCCAGGGTGATGGTCTTGCCCGTGAGGGTCT 297927 Query 34966 TCACAAAGATCTGCATA 34982 | ||||||||||||||| Sbjct 297928 TGACAAAGATCTGCATA 297944 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 324629936306928