Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_015569.1 Length=178563 Score E Sequences producing significant alignments: (Bits) Value seq926 654 0.0 seq137 654 0.0 >seq926 Length=180086 Score = 654 bits (724), Expect = 0.0 Identities = 741/988 (75%), Gaps = 4/988 (0%) Strand=Plus/Plus Query 83970 GACGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGC 84029 ||||| | ||| | || || |||||||| |||||||| ||||| ||||||||||| | Sbjct 17169 GACGCTAAATCTAGAGGAAAATTATGTGCATTACGTTCATGCATTACTTCCATACCTAAA 17228 Query 84030 CCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGA 84089 || | || | | ||| ||||| ||||| | |||||| ||||||||| |||| Sbjct 17229 TTAGCTCTGTTTAAAATATCTGCCCAAGTATTAATTACACGGCCTTGGCTATCAACAACT 17288 Query 84090 CTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCA 84149 ||||||||||| || ||||| | ||| || ||||| || |||||| || || | | Sbjct 17289 GATTGATTGAAGTTGAAACCATTTAAATTGAAAGCCATAGTACTAACAGACATTGCTGTA 17348 Query 84150 AACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTG 84209 |||||||| || || || ||||| | | ||||| || || || |||||| ||||| Sbjct 17349 AACCAAATACCTACAACAGGCCACATACCTAAGAAGAAATGTAGCGAACGAGAGTTGTTA 17408 Query 84210 AAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAA 84269 || |||||| ||||| || | ||| || ||||| || ||||| ||||||||||||||| Sbjct 17409 AAACTAGCATATTGGAAAATTAAACGTCCAAAGTAACCATGAGCTGCAACAATATTATAA 17468 Query 84270 GTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCT 84329 ||||| ||||||||||| ||||||||||||| ||| ||| | ||||| || || || Sbjct 17469 GTTTCTTCTTCTTGACCAAACTTGTAACCATTGTTAGCTGATTCGTTTTCAGTTGTCTCA 17528 Query 84330 CGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAAT 84389 || |||| | |||||| ||||| ||||||||||| ||| |||| || || || ||| Sbjct 17529 CGAATTAAACTAGAAGTTACAAGAGAACCATGCATAGCACTAAATAAAGAACCCCCAAAT 17588 Query 84390 ACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAG 84449 ||||| || || || || ||| || |||||||| || |||||||| || || ||||| Sbjct 17589 ACACCTGCTACACCTAATTGGTGGAAAGGATGCATTAGAATGTTATGCTCAGCTTGGAAA 17648 Query 84450 ACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCT 84509 |||||||| | ||||| || || ||||| || | ||||| ||||||||||| ||| Sbjct 17649 ACAAGCATAAAATTGAATGTACCAGAGATGCCTAAAGGCATACCATCAGAGAAGCTTCCT 17708 Query 84510 TGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCA 84569 || || | ||||| ||||| ||||| || | ||| ||||| || ||||| | ||||| Sbjct 17709 TGACCAATTGGATAAACAAGAAATACTGCTGCTGCTGCTGCTACAGGAGCTGTAAAAGCA 17768 Query 84570 ACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAA 84629 || ||||||| || |||||||| | ||| || | ||||||||||||||| || | | Sbjct 17769 ACTGAGATCCAAGGGCGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCAATAT-A 17827 Query 84630 GCAA-ATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAG 84688 |||| || |||| | | ||||||| |||| |||| ||| || |||||||||||||| Sbjct 17828 GCAACATACACCTAAAATAAAGTGAAGAACAATTAGTTCATATGGGCCACCATTATATAG 17887 Query 84689 CCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGA 84748 ||| || || | | ||| ||||||||||||||||| || || | |||||| || ||| Sbjct 17888 CCACTCATCTAAAGATGCAGCTTCCCAAATAGGATAAAAGTGAATACCAATTGCTGCAGA 17947 Query 84749 GGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGG 84808 || | | ||||||||||||||||| || || || | | |||||| || ||||| Sbjct 17948 ACTAGGTATAATAGCACCAGAAATGATGTTATTACCATAAAGTAAAGAACCTGCAACTGG 18007 Query 84809 CTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGA 84867 ||||||||||| || || |||||||| |||||| ||||||||||||||||||| ||||| Sbjct 18008 TTCACGGATACCATCGATGTCAACTGGAGGTGCAGCAACGAATGCAATGATGAATACAGA 18067 Query 84868 CAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGT 84927 || || | ||||| ||||| ||||| || ||||||||||||| ||| | ||||| Sbjct 18068 -TGTAGCTGTTAGTAGTGTTGGTATCATTAGTACACCAAACCAACCAATATATAGACGGT 18126 Query 84928 TGTTAGTGGAGGTGACCCAATCACAGAA 84955 | | ||| || | |||| ||||||| Sbjct 18127 TTTCAGTACTAGTAATCCAAGCACAGAA 18154 >seq137 Length=19730 Score = 654 bits (724), Expect = 0.0 Identities = 741/988 (75%), Gaps = 4/988 (0%) Strand=Plus/Minus Query 83970 GACGCAAGATCCAACGGGAAGTTATGTGCGTTACGTTCGTGCATCACTTCCATACCAAGC 84029 ||||| | ||| | || || |||||||| |||||||| ||||| ||||||||||| | Sbjct 17753 GACGCTAAATCTAGAGGAAAATTATGTGCATTACGTTCATGCATTACTTCCATACCTAAA 17694 Query 84030 CCGGCACGATTAAGTACATCGGCCCAGGTATTGACAACACGGTTTTGGCTATCGACAAGA 84089 || | || | | ||| ||||| ||||| | |||||| ||||||||| |||| Sbjct 17693 TTAGCTCTGTTTAAAATATCTGCCCAAGTATTAATTACACGGCCTTGGCTATCAACAACT 17634 Query 84090 CTCTGATTGAAGTTAAATCCATTCAGATTAAATGCCATGGTGCTAACACCCAGAGCAGCA 84149 ||||||||||| || ||||| | ||| || ||||| || |||||| || || | | Sbjct 17633 GATTGATTGAAGTTGAAACCATTTAAATTGAAAGCCATAGTACTAACAGACATTGCTGTA 17574 Query 84150 AACCAAATGCCAACCACTGGCCAAGCAGCCAAGAAAAAGTGGAGAGAACGACTATTGTTG 84209 |||||||| || || || ||||| | | ||||| || || || |||||| ||||| Sbjct 17573 AACCAAATACCTACAACAGGCCACATACCTAAGAAGAAATGTAGCGAACGAGAGTTGTTA 17514 Query 84210 AAGGAAGCATACTGGAAGATAAGACGACCGAAGTAGCCGTGAGCAGCAACAATATTATAA 84269 || |||||| ||||| || | ||| || ||||| || ||||| ||||||||||||||| Sbjct 17513 AAACTAGCATATTGGAAAATTAAACGTCCAAAGTAACCATGAGCTGCAACAATATTATAA 17454 Query 84270 GTTTCCTCTTCTTGACCGAACTTGTAACCATAGTTTTGTGAGACATTTTCTGTAGTTTCT 84329 ||||| ||||||||||| ||||||||||||| ||| ||| | ||||| || || || Sbjct 17453 GTTTCTTCTTCTTGACCAAACTTGTAACCATTGTTAGCTGATTCGTTTTCAGTTGTCTCA 17394 Query 84330 CGGATTAGAGAAGAAGTGACAAGTGAACCATGCATTGCAGAGAATAGAGCTCCACCGAAT 84389 || |||| | |||||| ||||| ||||||||||| ||| |||| || || || ||| Sbjct 17393 CGAATTAAACTAGAAGTTACAAGAGAACCATGCATAGCACTAAATAAAGAACCCCCAAAT 17334 Query 84390 ACACCAGCAACTCCCAACATGTGAAAGGGATGCATAAGGATGTTATGTTCCGCCTGGAAG 84449 ||||| || || || || ||| || |||||||| || |||||||| || || ||||| Sbjct 17333 ACACCTGCTACACCTAATTGGTGGAAAGGATGCATTAGAATGTTATGCTCAGCTTGGAAA 17274 Query 84450 ACAAGCATGTAGTTGAACGTTCCTGAGATACCAAGTGGCATGCCATCAGAGAAAGAACCT 84509 |||||||| | ||||| || || ||||| || | ||||| ||||||||||| ||| Sbjct 17273 ACAAGCATAAAATTGAATGTACCAGAGATGCCTAAAGGCATACCATCAGAGAAGCTTCCT 17214 Query 84510 TGCCCGAAAGGATACACAAGGAATACAGCAGATGCCGCTGCAACTGGAGCAGAGTAAGCA 84569 || || | ||||| ||||| ||||| || | ||| ||||| || ||||| | ||||| Sbjct 17213 TGACCAATTGGATAAACAAGAAATACTGCTGCTGCTGCTGCTACAGGAGCTGTAAAAGCA 17154 Query 84570 ACACAGATCCATGGACGCATACCGAGACGATATGAAAGTTCCCATTCACGACCCATGTAA 84629 || ||||||| || |||||||| | ||| || | ||||||||||||||| || || Sbjct 17153 ACTGAGATCCAAGGGCGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCAATATA- 17095 Query 84630 GCAA-ATGCACCAATCAGGAAGTGAAAGACAACAAGTTGATAAGGTCCACCATTATATAG 84688 |||| || |||| | | ||||||| |||| |||| ||| || |||||||||||||| Sbjct 17094 GCAACATACACCTAAAATAAAGTGAAGAACAATTAGTTCATATGGGCCACCATTATATAG 17035 Query 84689 CCATTCGTCCATACTTGCTGCTTCCCAAATAGGATAGAAATGTAGACCAATAGCATTAGA 84748 ||| || || | | ||| ||||||||||||||||| || || | |||||| || ||| Sbjct 17034 CCACTCATCTAAAGATGCAGCTTCCCAAATAGGATAAAAGTGAATACCAATTGCTGCAGA 16975 Query 84749 GGATGGAACTACGGCACCAGAAATGATGTTGTTTCCGTACATGAGAGAACCAGCGACTGG 84808 || | | ||||||||||||||||| || || || | | |||||| || ||||| Sbjct 16974 ACTAGGTATAATAGCACCAGAAATGATGTTATTACCATAAAGTAAAGAACCTGCAACTGG 16915 Query 84809 CTCACGGATACCGTCAATATCAACTGGGGGTGCACCAACGAATGCAATGATGAA-ACAGA 84867 ||||||||||| || || |||||||| |||||| ||||||||||||||||||| ||||| Sbjct 16914 TTCACGGATACCATCGATGTCAACTGGAGGTGCAGCAACGAATGCAATGATGAATACAGA 16855 Query 84868 CAGTGGCAGCAAGTAGAGTTGGAATCATAAGAGTTCCAAACCAACCAACATAGATACGGT 84927 || || | ||||| ||||| ||||| || ||||||||||||| ||| | ||||| Sbjct 16854 -TGTAGCTGTTAGTAGTGTTGGTATCATTAGTACACCAAACCAACCAATATATAGACGGT 16796 Query 84928 TGTTAGTGGAGGTGACCCAATCACAGAA 84955 | | ||| || | |||| ||||||| Sbjct 16795 TTTCAGTACTAGTAATCCAAGCACAGAA 16768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571266987508080