Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq759 125 8e-24 >seq759 Length=98512 Score = 125 bits (138), Expect = 8e-24 Identities = 496/775 (64%), Gaps = 10/775 (1%) Strand=Plus/Minus Query 47862 ATAACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTA 47921 || |||||| | || || || ||||| || | || || ||||| ||||||| || | Sbjct 48482 ATTACAAACTTGTTGAGGGCAATAGAAGCCAAGTTGCAAACAGCAACCTCATCCGGGGCA 48423 Query 47922 GTATATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGA 47981 ||||| | | || || | || ||||| | ||||||| || || | ||||| || Sbjct 48422 GTATACTCAACAATCTCTGTGCAAAGATTGGAAGATTTGATGGTTCCGAGGTTTTGCTGG 48363 Query 47982 TTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGA 48041 || | |||||| || |||||||| ||||| | || |||||||||| ||||| Sbjct 48362 TTGCTCTTCCGGTTACAAGCATCCTTGTAGAGCATGTACGGATTTCCAGTTTCAATCTGG 48303 Query 48042 GATTCAATGATAGATTTCCAAACAGTCCTAGCCTTTAT--AACAGCTCTAGCTTTATTAT 48099 | ||| | |||| | ||| | | || || | || ||| || ||| | Sbjct 48302 GCTTCGAGAATAGCATACCAGATCTTTCTCGCGCTCATGGAACTGCGT--GCTCGGCCGT 48245 Query 48100 CATGTTCGTATTTAGTATATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAG 48159 | | ||||| || || | || ||||||||| ||||| || | | | |||| Sbjct 48244 CCTTCTCGTACTTTTCGTACAGCTCTTCAAATTCAGTGCCATAGACGTCGGCCAGACCAG 48185 Query 48160 GACATTCATTAGGACACATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATA 48219 | | ||||| ||||| | | ||||| | ||||| || || | ||||||| | Sbjct 48184 GGGACTCATTCGGACAGAAAAGCGACCACTGGCCATCAGCTTCGACGCGCTTCATAAAGA 48125 Query 48220 TATCTGGTATCCAAAGAGCTATA-AATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTA 48278 ||||| ||||| || || || || | || | || || ||||||| |||||| | Sbjct 48124 GGTCTGGGATCCATAG-GCCGTAGAAGAGGTCACGAGCCCTCTGTTCTTCCTTGCCATGA 48066 Query 48279 TTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCC 48338 ||| | ||| ||||||||||| | ||||| || ||||| || || ||||| || || Sbjct 48065 TTCTTGCGAAGATCAAGAAAGTCGAGGATATCTGCGTGCCAAGGCTCCAAATAGATAGCA 48006 Query 48339 ATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACT 48398 | | |||| || || || ||||| || | ||| || || || | || | || Sbjct 48005 AATGCACCCTTCCGCTTCCCGCCACCTTGGTCCACATACCTAGCTGTGTCATTGAAGACA 47946 Query 48399 CTTAACATTGGGACAATACCATTTGATATACCATTGGTTC--CCGAAATATAACTTCCAC 48456 | | ||| || ||||| || || || |||| ||||| | | || || |||| Sbjct 47945 CGAAGCATAGGCACAATTCCGTTCGACGTACCGTTGGTACCACGGATGTACGACTT--TG 47888 Query 48457 TAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTAGAGCAC 48516 | || || || || || | || || || ||||| || || || | ||| | Sbjct 47887 TGCATCGGATGTTGTGGATAGACAATCCAATGCCGCCTGCGGCCTTGGAAATGATAGCGC 47828 Query 48517 ACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATAGAAAAC 48576 | || || || || |||||||| ||||| || || || ||||| | | || || | Sbjct 47827 AGCGCTTGAGAGTGTCATAAATGCCTTCAATGGAGTCCTCAGTCATAGTGAGAAGGAAGC 47768 Query 48577 AACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCATG 48631 || || | || || | || || |||| ||| |||| ||||| || ||||| Sbjct 47767 AAGAGGATAGCTGGGGGCGGCAGGTGCCTGCATTGAATAGCGTTGGCGAGGCATG 47713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562102293590640