Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_016072.1 Length=1259197 Score E Sequences producing significant alignments: (Bits) Value seq926 181 9e-40 seq89 181 9e-40 >seq926 Length=180086 Score = 181 bits (200), Expect = 9e-40 Identities = 322/467 (69%), Gaps = 17/467 (4%) Strand=Plus/Plus Query 552112 TACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAAT-GTTA 552170 || ||||||| || | |||||||| ||||||||||| ||| || | ||| | || | Sbjct 83539 TAGATGAAATAGTCTTAGTTGGTGGTTCTACAAGAATACCTGCTATACAAGAACTAGTGA 83598 Query 552171 AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCC 552230 | ||| | ||||||| | ||| ||||||| ||||||||||| | ||||| Sbjct 83599 AAAAA--ATT--ATTGGTAAAGATCCTAATCAAAGTGTAAATCCAGATGAAGTAGTTGCT 83654 Query 552231 TATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAAT 552290 ||| || || ||||||||| | || | |||| || | | || | |||| Sbjct 83655 ATTGGAGCAGCTGTTCAAGCAGGTGTTTTAGCTGGTGAAGTTAAAGATATACTA------ 83708 Query 552291 ATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATG 552350 |||| |||||||||||||| |||| | || ||||||| | || ||| | ||| Sbjct 83709 -TTGT-----TAGATGTTACTCCTTTATCATTGGGGGTAGAAACTTTAGGTGGTGTAATG 83762 Query 552351 ACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACG 552410 || || |||| | ||||||| ||| | ||| ||||||||| || || || || Sbjct 83763 ACAAAAATTATTGCACGAAATACAACTGTACCTACTAAAAAATCAGAAGTTTTCTCAACT 83822 Query 552411 TATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACT 552470 | ||||||||| | ||| |||||| ||| | |||||||| || |||| || Sbjct 83823 GCTGTAGATAATCAGCCGAATGTAGAAATTCATATTCTACAAGGAGAACGAGAATTTACA 83882 Query 552471 AAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGA 552530 ||||||||||| || || ||||||| | || |||||| || || || | || Sbjct 83883 AAAGATAATAAAAGCCTAGGAACTTTTAGACTGGATGGTATTATGCCAGCACCAAGAGGT 83942 Query 552531 GTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTT 552577 ||||| ||||| ||||| ||||||||||| ||||| ||||| ||||| Sbjct 83943 GTACCTCAAATAGAAGTAACTTTCGATATAGATGCTAATGGTATTTT 83989 Score = 102 bits (112), Expect = 7e-16 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 550309 TAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACA-G 550367 |||| | ||||| |||||| || | ||| | ||||| | |||||| | || | | Sbjct 82874 TAAAGATTTTTCTCCAGAAGAAGTATCAGCACAAGTTTTGA-GAAAATTAGTAGAAGATG 82932 Query 550368 CCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTA 550427 | ||| | | | | || ||| || || | || ||||| || || || |||||||||| Sbjct 82933 CTAGTACATATTTAGGACAAACTGTAACTCAAGCTGTAATTACAGTCCCTGCATATTTTA 82992 Query 550428 ATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTC 550487 |||| || || | ||||| || ||||||||||| | ||||||||||| |||| | Sbjct 82993 ATGATTCTCAGAGACAAGCAACAAAAGATGCTGGTCAGATTGCTGGACTAGATGTCTTAA 83052 Query 550488 GTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 | || || |||||||| || || ||| || | ||||||| | |||||| Sbjct 83053 GAATAATTAATGAACCAACAGCAGCTTCATTGTCATATGGTTTAGATAAA 83102 Score = 93.3 bits (102), Expect = 3e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 361705 ACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGC 361764 |||||| | |||||||| ||||||||||| ||||||||| | | |||| ||||| || Sbjct 83093 ACCATATGACAATGAAGCTGCTGTTGGTTCATTAATTATTCTTAAGACATCTAGTCCAGC 83034 Query 361765 TATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGT 361824 || | |||||| || ||||| | || | |||||||||||||||||| || || Sbjct 83033 AATCTGACCAGCATCTTTTGTTGCTTGTCTCTGAGAATCATTAAAATATGCAGGGACTGT 82974 Query 361825 AATCACTGCTT 361835 ||| || |||| Sbjct 82973 AATTACAGCTT 82963 >seq89 Length=37195 Score = 181 bits (200), Expect = 9e-40 Identities = 322/467 (69%), Gaps = 17/467 (4%) Strand=Plus/Plus Query 552112 TACATGAAATTGTGCTTGTTGGTGGATCTACAAGAATTCCTAAAATTCGCGAAAT-GTTA 552170 || ||||||| || | |||||||| ||||||||||| ||| || | ||| | || | Sbjct 32351 TAGATGAAATAGTCTTAGTTGGTGGTTCTACAAGAATACCTGCTATACAAGAACTAGTGA 32410 Query 552171 AGTTCTTATTTCAATGGTAAAAAATTAAATGAAAGTGTTAATCCAGATGAGGCTGTTGCC 552230 | ||| | ||||||| | ||| ||||||| ||||||||||| | ||||| Sbjct 32411 AAAAA--ATT--ATTGGTAAAGATCCTAATCAAAGTGTAAATCCAGATGAAGTAGTTGCT 32466 Query 552231 TATGGTGCCGCAATTCAAGCAGCTATTCTTTCTGGACAAACTGATGAAAAACTACAAAAT 552290 ||| || || ||||||||| | || | |||| || | | || | |||| Sbjct 32467 ATTGGAGCAGCTGTTCAAGCAGGTGTTTTAGCTGGTGAAGTTAAAGATATACTA------ 32520 Query 552291 ATTGTACTTGTAGATGTTACTCCTCTATCTCTTGGTTTAGAAACAGTTGGAGGTATTATG 552350 |||| |||||||||||||| |||| | || ||||||| | || ||| | ||| Sbjct 32521 -TTGT-----TAGATGTTACTCCTTTATCATTGGGGGTAGAAACTTTAGGTGGTGTAATG 32574 Query 552351 ACTAATCTTATCGATAGAAATACTACTATTCCTTGTAAAAAATCTCGTGTATTTTCTACG 552410 || || |||| | ||||||| ||| | ||| ||||||||| || || || || Sbjct 32575 ACAAAAATTATTGCACGAAATACAACTGTACCTACTAAAAAATCAGAAGTTTTCTCAACT 32634 Query 552411 TATTCAGATAATCAAACTGCTGTTACAATTCAAATTTTTGAAGGAGAAAGAAAATTCACT 552470 | ||||||||| | ||| |||||| ||| | |||||||| || |||| || Sbjct 32635 GCTGTAGATAATCAGCCGAATGTAGAAATTCATATTCTACAAGGAGAACGAGAATTTACA 32694 Query 552471 AAAGATAATAATCAACTTGGTACTTTTAATTTAGAAGGTATTCCTCCTGCTCCTCGTGGA 552530 ||||||||||| || || ||||||| | || |||||| || || || | || Sbjct 32695 AAAGATAATAAAAGCCTAGGAACTTTTAGACTGGATGGTATTATGCCAGCACCAAGAGGT 32754 Query 552531 GTACCGCAAATTGAAGTTACTTTCGATATCGATGCCAATGGAATTTT 552577 ||||| ||||| ||||| ||||||||||| ||||| ||||| ||||| Sbjct 32755 GTACCTCAAATAGAAGTAACTTTCGATATAGATGCTAATGGTATTTT 32801 Score = 102 bits (112), Expect = 7e-16 Identities = 162/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 550309 TAAACAATTTTCACCAGAACAAATTTCATCTATGGTTTTAATGAAAATGAAACAAACA-G 550367 |||| | ||||| |||||| || | ||| | ||||| | |||||| | || | | Sbjct 31686 TAAAGATTTTTCTCCAGAAGAAGTATCAGCACAAGTTTTGA-GAAAATTAGTAGAAGATG 31744 Query 550368 CCAGTGCTTTTGTTGGTCAAGAAGTTACGGATGCAGTAATAACTGTACCAGCATATTTTA 550427 | ||| | | | | || ||| || || | || ||||| || || || |||||||||| Sbjct 31745 CTAGTACATATTTAGGACAAACTGTAACTCAAGCTGTAATTACAGTCCCTGCATATTTTA 31804 Query 550428 ATGACTCACAACGTCAAGCTACTAAAGATGCTGGACGTATTGCTGGACTTAATGTTCTTC 550487 |||| || || | ||||| || ||||||||||| | ||||||||||| |||| | Sbjct 31805 ATGATTCTCAGAGACAAGCAACAAAAGATGCTGGTCAGATTGCTGGACTAGATGTCTTAA 31864 Query 550488 GTATTATCAATGAACCTACTGCTGCTGCACTTGCATATGGACTTGATAAA 550537 | || || |||||||| || || ||| || | ||||||| | |||||| Sbjct 31865 GAATAATTAATGAACCAACAGCAGCTTCATTGTCATATGGTTTAGATAAA 31914 Score = 93.3 bits (102), Expect = 3e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 361705 ACCATAAGCTAATGAAGCAGCTGTTGGTTCGTTAATTATTTTAATAACATTGAGTCCCGC 361764 |||||| | |||||||| ||||||||||| ||||||||| | | |||| ||||| || Sbjct 31905 ACCATATGACAATGAAGCTGCTGTTGGTTCATTAATTATTCTTAAGACATCTAGTCCAGC 31846 Query 361765 TATTTTTGATGCATCTAAAGTGGCTTGACGTTGTGCATCATTAAAATATGCAGGAACAGT 361824 || | |||||| || ||||| | || | |||||||||||||||||| || || Sbjct 31845 AATCTGACCAGCATCTTTTGTTGCTTGTCTCTGAGAATCATTAAAATATGCAGGGACTGT 31786 Query 361825 AATCACTGCTT 361835 ||| || |||| Sbjct 31785 AATTACAGCTT 31775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 4029247028943740