Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_016656.1 Length=45890 Score E Sequences producing significant alignments: (Bits) Value seq926 423 6e-114 seq137 423 6e-114 >seq926 Length=180086 Score = 423 bits (468), Expect = 6e-114 Identities = 695/997 (70%), Gaps = 4/997 (0%) Strand=Plus/Minus Query 25793 TGGGAGAGGTTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTC 25852 ||||| | || |||| ||| |||| |||||||| |||||||| ||| | || ||||| Sbjct 18163 TGGGAACGTTTCTGTGCTTGGATTACTAGTACTGAAAACCGTCTATATATTGGTTGGTTT 18104 Query 25853 GGGGTGCTTATGATACCCTGCTTACTCGCAGCCACTACATGTTTT-ATACTTGCCTTCAT 25911 || || || |||||||| |||| |||| || | ||| || || |||| ||| | Sbjct 18103 GGTGTACTAATGATACCAACACTACTAACAGCTACATC-TGTATTCATCATTGCATTCGT 18045 Query 25912 CGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTA 25971 || ||||| || || || || ||||| || ||||| |||||| | || || ||| | || Sbjct 18044 TGCTGCACCTCCAGTTGACATCGATGGTATCCGTGAACCAGTTGCAGGTTCTTTACTTTA 17985 Query 25972 CGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTT 26031 || || || || || || || || | | || ||| ||||| || | || || Sbjct 17984 TGGTAATAACATCATTTCTGGTGCTATTATACCTAGTTCTGCAGCAATTGGTATTCACTT 17925 Query 26032 TTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCA 26091 ||| || || |||||||||| | | || ||||||||||| ||||| || |||||| | Sbjct 17924 TTATCCTATTTGGGAAGCTGCATCTTTAGATGAGTGGCTATATAATGGTGGCCCATATGA 17865 Query 26092 ACTCATTATCTTCCACTTCTTAATAGGAGTA-GCAGCATATGCAGGGAGACAGTGGGAAC 26150 ||| ||| | | ||||| | |||| ||| | || ||| || | | |||||| Sbjct 17864 ACTAATTGTTCTTCACTTTATTTTAGGTGTATGTTGC-TATATTGGTCGTGAATGGGAAT 17806 Query 26151 TATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCG 26210 || ||| | |||| ||| | || ||||| | ||||| | |||||| || || | | Sbjct 17805 TAAGCTACCGTTTAGGTATGCGCCCTTGGATCTCAGTTGCTTTTACAGCTCCTGTAGCAG 17746 Query 26211 CAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGC 26270 |||| ||||| || | |||||||| | || ||||| || || |||||| |||| Sbjct 17745 CAGCAGCAGCAGTATTTCTTGTTTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGC 17686 Query 26271 CTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATAC 26330 || | || ||||||||||| || || |||||| | || |||||||| || ||||| || | Sbjct 17685 CTTTAGGCATCTCTGGTACATTCAATTTTATGCTTGTTTTCCAAGCTGAGCATAACATTC 17626 Query 26331 TCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTG 26390 | ||||| || ||||| ||||| || || || || || || || | || || Sbjct 17625 TAATGCATCCTTTCCACCAATTAGGTGTAGCAGGTGTATTTGGGGGTTCTTTATTTAGTG 17566 Query 26391 CTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCAC 26450 ||||||| || | | || ||||| | ||| || || || || | | ||| Sbjct 17565 CTATGCATGGTTCTCTTGTAACTTCTAGTTTAATTCGTGAGACAACTGAAAACGAATCAG 17506 Query 26451 AGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACG 26510 || |||| || |||||||| ||||| ||||| || ||||||||||| || || || | Sbjct 17505 CTAACAATGGTTACAAGTTTGGTCAAGAAGAAGAAACTTATAATATTGTTGCAGCTCATG 17446 Query 26511 GGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATT 26570 | |||||||| | |||||||| || ||||| |||||||| ||| ||||| || |||| Sbjct 17445 GTTACTTTGGACGTTTAATTTTCCAATATGCTAGTTTTAACAACTCTCGTTCGCTACATT 17386 Query 26571 TCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAA 26630 |||| | | || ||||| ||||| || || ||| | ||| | ||| | | | || | Sbjct 17385 TCTTCTTAGGTATGTGGCCTGTTGTAGGTATTTGGTTTACAGCAATGTCTGTTAGTACTA 17326 Query 26631 TGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGA 26690 |||| || || |||||||||| ||||| || || ||||| || ||| | || Sbjct 17325 TGGCTTTCAATTTAAATGGTTTCAACTTCAATCAATCAGTTGTTGATAGCCAAGGCCGTG 17266 Query 26691 TAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACG 26750 |||| ||| ||||| ||| | |||||| ||||||| | || | ||||| ||||| | Sbjct 17265 TAATTAATACTTGGGCAGATATTTTAAACAGAGCTAATTTAGGTATGGAAGTAATGCATG 17206 Query 26751 AGCGTAATGCTCATAACTTTCCACTTGACTTAGCATC 26787 | |||||||| ||||| ||||| || || ||||| || Sbjct 17205 AACGTAATGCACATAATTTTCCTCTAGATTTAGCGTC 17169 >seq137 Length=19730 Score = 423 bits (468), Expect = 6e-114 Identities = 695/997 (70%), Gaps = 4/997 (0%) Strand=Plus/Plus Query 25793 TGGGAGAGGTTTTGTGAGTGGGTTACAAGTACTGAGAACCGTCTCTATGTGGGATGGTTC 25852 ||||| | || |||| ||| |||| |||||||| |||||||| ||| | || ||||| Sbjct 16759 TGGGAACGTTTCTGTGCTTGGATTACTAGTACTGAAAACCGTCTATATATTGGTTGGTTT 16818 Query 25853 GGGGTGCTTATGATACCCTGCTTACTCGCAGCCACTACATGTTTT-ATACTTGCCTTCAT 25911 || || || |||||||| |||| |||| || | ||| || || |||| ||| | Sbjct 16819 GGTGTACTAATGATACCAACACTACTAACAGCTACATC-TGTATTCATCATTGCATTCGT 16877 Query 25912 CGCAGCACCGCCTGTAGATATAGATGGCATACGTGAGCCAGTTTCCGGCTCGTTAATGTA 25971 || ||||| || || || || ||||| || ||||| |||||| | || || ||| | || Sbjct 16878 TGCTGCACCTCCAGTTGACATCGATGGTATCCGTGAACCAGTTGCAGGTTCTTTACTTTA 16937 Query 25972 CGGAAACAATATAATATCAGGAGCAGTCGTCCCCTCCTCTAACGCAATCGGACTACATTT 26031 || || || || || || || || | | || ||| ||||| || | || || Sbjct 16938 TGGTAATAACATCATTTCTGGTGCTATTATACCTAGTTCTGCAGCAATTGGTATTCACTT 16997 Query 26032 TTACCCGATCTGGGAAGCTGGCACACTGGACGAGTGGCTATACAATGGCGGACCATATCA 26091 ||| || || |||||||||| | | || ||||||||||| ||||| || |||||| | Sbjct 16998 TTATCCTATTTGGGAAGCTGCATCTTTAGATGAGTGGCTATATAATGGTGGCCCATATGA 17057 Query 26092 ACTCATTATCTTCCACTTCTTAATAGGAGTA-GCAGCATATGCAGGGAGACAGTGGGAAC 26150 ||| ||| | | ||||| | |||| ||| | || ||| || | | |||||| Sbjct 17058 ACTAATTGTTCTTCACTTTATTTTAGGTGTATGTTGC-TATATTGGTCGTGAATGGGAAT 17116 Query 26151 TATCTTACAGACTAGGAATGAGACCATGGATATTTGTTGCATATACAGCACCACTATCCG 26210 || ||| | |||| ||| | || ||||| | ||||| | |||||| || || | | Sbjct 17117 TAAGCTACCGTTTAGGTATGCGCCCTTGGATCTCAGTTGCTTTTACAGCTCCTGTAGCAG 17176 Query 26211 CAGCTCTCGCAGTGTTCTTAGTTTATCCTTTCGGACAAGGGAGTTTTAGTGATGGAATGC 26270 |||| ||||| || | |||||||| | || ||||| || || |||||| |||| Sbjct 17177 CAGCAGCAGCAGTATTTCTTGTTTATCCAATTGGTCAAGGAAGCTTCTCTGATGGTATGC 17236 Query 26271 CTCTTGGTATCTCTGGTACTTTTAACTTTATGTTCGTATTCCAAGCAGAACATAATATAC 26330 || | || ||||||||||| || || |||||| | || |||||||| || ||||| || | Sbjct 17237 CTTTAGGCATCTCTGGTACATTCAATTTTATGCTTGTTTTCCAAGCTGAGCATAACATTC 17296 Query 26331 TCATGCACCCATTCCATATGGCTGGTGTTGCTGGGGTTTTCGGTGGAGCTCTTTTCGCTG 26390 | ||||| || ||||| ||||| || || || || || || || | || || Sbjct 17297 TAATGCATCCTTTCCACCAATTAGGTGTAGCAGGTGTATTTGGGGGTTCTTTATTTAGTG 17356 Query 26391 CTATGCACGGAAGTTTGGTTACTTCCTCACTTATTGCAGAAACGACAGAGGAAGTCTCAC 26450 ||||||| || | | || ||||| | ||| || || || || | | ||| Sbjct 17357 CTATGCATGGTTCTCTTGTAACTTCTAGTTTAATTCGTGAGACAACTGAAAACGAATCAG 17416 Query 26451 AGAATTATGGCTATAAGTTTGGGCAAGATGAAGAGACATATAATATTGTCGCTGCACACG 26510 || |||| || |||||||| ||||| ||||| || ||||||||||| || || || | Sbjct 17417 CTAACAATGGTTACAAGTTTGGTCAAGAAGAAGAAACTTATAATATTGTTGCAGCTCATG 17476 Query 26511 GGTACTTTGGGAGATTAATTTTTCAGTATGCGAGTTTTAATAACAGCCGTTCTCTTCATT 26570 | |||||||| | |||||||| || ||||| |||||||| ||| ||||| || |||| Sbjct 17477 GTTACTTTGGACGTTTAATTTTCCAATATGCTAGTTTTAACAACTCTCGTTCGCTACATT 17536 Query 26571 TCTTTCTTGCTACTTGGCCGGTTGTTGGCATATGGCTGACATCTATGGGTATCTGCACAA 26630 |||| | | || ||||| ||||| || || ||| | ||| | ||| | | | || | Sbjct 17537 TCTTCTTAGGTATGTGGCCTGTTGTAGGTATTTGGTTTACAGCAATGTCTGTTAGTACTA 17596 Query 26631 TGGCATTTAACCTAAATGGTTTTAACTTTAACCAGTCAGTAGTAGATGTTAATGGAAAGA 26690 |||| || || |||||||||| ||||| || || ||||| || ||| | || Sbjct 17597 TGGCTTTCAATTTAAATGGTTTCAACTTCAATCAATCAGTTGTTGATAGCCAAGGCCGTG 17656 Query 26691 TAATACCTACATGGGCTGATGTATTAAACCGAGCTAACCTCGGCTTTGAAGTTATGCACG 26750 |||| ||| ||||| ||| | |||||| ||||||| | || | ||||| ||||| | Sbjct 17657 TAATTAATACTTGGGCAGATATTTTAAACAGAGCTAATTTAGGTATGGAAGTAATGCATG 17716 Query 26751 AGCGTAATGCTCATAACTTTCCACTTGACTTAGCATC 26787 | |||||||| ||||| ||||| || || ||||| || Sbjct 17717 AACGTAATGCACATAATTTTCCTCTAGATTTAGCGTC 17753 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 146724786559824