Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_016657.1 Length=47055 Score E Sequences producing significant alignments: (Bits) Value seq926 538 1e-148 seq137 538 1e-148 >seq926 Length=180086 Score = 538 bits (596), Expect = 1e-148 Identities = 741/1034 (72%), Gaps = 4/1034 (0%) Strand=Plus/Plus Query 35933 AGCAGGTGCTATCAGTGCTACCTCGGTA--GACTCAGCAGCTGCTAGGTCAAGTGGGAAG 35990 ||| ||||| | || ||||| |||| || | | ||| |||| || || || || Sbjct 17132 AGCTGGTGCAACTAGAGCTACT--GGTAATGAGTTACCAGACGCTAAATCTAGAGGAAAA 17189 Query 35991 TTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACGGTTAAGAATGTCA 36050 || ||||| ||||| |||||||| |||||||| ||||| | || | ||| | ||| || Sbjct 17190 TTATGTGCATTACGTTCATGCATTACTTCCATACCTAAATTAGCTCTGTTTAAAATATCT 17249 Query 36051 GCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACTGATTGAAGTTAAAGCCG 36110 |||||||| | || | || | | |||||| ||||| ||||||||||| || || Sbjct 17250 GCCCAAGTATTAATTACACGGCCTTGGCTATCAACAACTGATTGATTGAAGTTGAAACCA 17309 Query 36111 TTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGC 36170 || | ||| ||||||||||| || ||| || |||| ||| || | || ||| Sbjct 17310 TTTAAATTGAAAGCCATAGTACTAACAGACATTGCTGTAAACCAAATACCTACAACAGGC 17369 Query 36171 CAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAGATG 36230 || | | | ||||||||||| || || ||||| |||||||| ||||| || Sbjct 17370 CACATACCTAAGAAGAAATGTAGCGAACGAGAGTTGTTAAAACTAGCATATTGGAAAATT 17429 Query 36231 AGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAAT 36290 | | |||||||| |||||||| |||||||| ||||| || ||||||||||| || || Sbjct 17430 AAACGTCCAAAGTAACCATGAGCTGCAACAATATTATAAGTTTCTTCTTCTTGACCAAAC 17489 Query 36291 TTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACA 36350 || || |||| ||| ||||| ||||||| |||||||| | ||||| ||| Sbjct 17490 TTGTAACCATTGTTAGCTGATTCGTTTTCAGTTGTCTCACGAATTAAACTAGAAGTTACA 17549 Query 36351 AGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATA 36410 ||| || ||||||||| ||||||| || || ||||| ||||| ||||| | Sbjct 17550 AGAGAACCATGCATAGCACTAAATAAAGAACCCCCAAATACACCTGCTACACCTAATTGG 17609 Query 36411 TGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTC 36470 ||||| |||||||| || || || || || || || || |||| |||||||||||| || Sbjct 17610 TGGAAAGGATGCATTAGAATGTTATGCTCAGCTTGGAAAACAAGCATAAAATTGAATGTA 17669 Query 36471 CCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAG 36530 || || || || | |||||||||||||||||| || ||||| |||| || || || | Sbjct 17670 CCAGAGATGCCTAAAGGCATACCATCAGAGAAGCTTCCTTGACCAATTGGATAAACAAGA 17729 Query 36531 AATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATA 36590 ||||| || ||||||||| ||||| |||| | |||| || | ||||| || | |||| Sbjct 17730 AATACTGCTGCTGCTGCTGCTACAGGAGCTGTAAAAGCAACTGAGATCCAAGGGCGCATA 17789 Query 36591 CCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAG 36650 |||| | || || | |||||||| || || | || | | ||| | | |||| Sbjct 17790 CCTAAACGGTAGCTTAATTCCCATTCACGACCAATATAGCAACATACACCTAAAATAAAG 17849 Query 36651 TGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCT 36710 || | ||||| |||| |||||| || || ||||||| |||||| || | | ||||||| Sbjct 17850 TGAAGAACAATTAGTTCATATGGGCCACCATTATATAGCCACTCATCTAAAGATGCAGCT 17909 Query 36711 TCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAG 36770 ||||| || || || ||||||| ||| ||||| || || | || || ||||| Sbjct 17910 TCCCAAATAGGATAAAAGTGAATACCAATTGCTGCAGAACTAGGTATAATAGCACCAGAA 17969 Query 36771 ATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCC 36830 |||||||| || ||||| ||||| | |||| || || ||||| |||||||| || || Sbjct 17970 ATGATGTTATTACCATAAAGTAAAGAACCTGCAACTGGTTCACGGATACCATCGATGTCA 18029 Query 36831 ACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGG 36890 || ||||| |||||||| |||||||| | ||| | | ||||||| |||| || Sbjct 18030 ACTGGAGGTGCAGCAACGAATGCAATGATGAATACAGATGTAGCTGTTAGTAGTGTTGGT 18089 Query 36891 ATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCA 36950 ||||||||||| |||||||| || | ||| || ||||| | ||||| |||| ||| || Sbjct 18090 ATCATTAGTACACCAAACCAACCAATATATAGACGGTTTTCAGTACTAGTAATCCAAGCA 18149 Query 36951 CATAAACTTTCCCA 36964 || |||| |||||| Sbjct 18150 CAGAAACGTTCCCA 18163 >seq137 Length=19730 Score = 538 bits (596), Expect = 1e-148 Identities = 741/1034 (72%), Gaps = 4/1034 (0%) Strand=Plus/Minus Query 35933 AGCAGGTGCTATCAGTGCTACCTCGGTA--GACTCAGCAGCTGCTAGGTCAAGTGGGAAG 35990 ||| ||||| | || ||||| |||| || | | ||| |||| || || || || Sbjct 17790 AGCTGGTGCAACTAGAGCTACT--GGTAATGAGTTACCAGACGCTAAATCTAGAGGAAAA 17733 Query 35991 TTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTAAGTCGGCACGGTTAAGAATGTCA 36050 || ||||| ||||| |||||||| |||||||| ||||| | || | ||| | ||| || Sbjct 17732 TTATGTGCATTACGTTCATGCATTACTTCCATACCTAAATTAGCTCTGTTTAAAATATCT 17673 Query 36051 GCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGACTGACTGATTGAAGTTAAAGCCG 36110 |||||||| | || | || | | |||||| ||||| ||||||||||| || || Sbjct 17672 GCCCAAGTATTAATTACACGGCCTTGGCTATCAACAACTGATTGATTGAAGTTGAAACCA 17613 Query 36111 TTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGGTAAGCCATATGCAAGTGACGGGC 36170 || | ||| ||||||||||| || ||| || |||| ||| || | || ||| Sbjct 17612 TTTAAATTGAAAGCCATAGTACTAACAGACATTGCTGTAAACCAAATACCTACAACAGGC 17553 Query 36171 CAAGCAGCCAGGAAGAAATGTAAACTGCGGCTATTATTAAAGCTAGCATACTGGAAGATG 36230 || | | | ||||||||||| || || ||||| |||||||| ||||| || Sbjct 17552 CACATACCTAAGAAGAAATGTAGCGAACGAGAGTTGTTAAAACTAGCATATTGGAAAATT 17493 Query 36231 AGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTCTCTTCTTCTTGGCCGAAT 36290 | | |||||||| |||||||| |||||||| ||||| || ||||||||||| || || Sbjct 17492 AAACGTCCAAAGTAACCATGAGCTGCAACAATATTATAAGTTTCTTCTTCTTGACCAAAC 17433 Query 36291 TTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTTCACGAATAAGTGAGGAAGTAACA 36350 || || |||| ||| ||||| ||||||| |||||||| | ||||| ||| Sbjct 17432 TTGTAACCATTGTTAGCTGATTCGTTTTCAGTTGTCTCACGAATTAAACTAGAAGTTACA 17373 Query 36351 AGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGAATACCCCTGCAACACCGAGCATA 36410 ||| || ||||||||| ||||||| || || ||||| ||||| ||||| | Sbjct 17372 AGAGAACCATGCATAGCACTAAATAAAGAACCCCCAAATACACCTGCTACACCTAATTGG 17313 Query 36411 TGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAAAGACAAACATAAAATTGAAAGTC 36470 ||||| |||||||| || || || || || || || || |||| |||||||||||| || Sbjct 17312 TGGAAAGGATGCATTAGAATGTTATGCTCAGCTTGGAAAACAAGCATAAAATTGAATGTA 17253 Query 36471 CCTGAAATACCAAGAGGCATACCATCAGAGAAACTCCCTTGTCCAAAAGGGTAGACTAAG 36530 || || || || | |||||||||||||||||| || ||||| |||| || || || | Sbjct 17252 CCAGAGATGCCTAAAGGCATACCATCAGAGAAGCTTCCTTGACCAATTGGATAAACAAGA 17193 Query 36531 AATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAGCTACACATATCCACGGCCTCATA 36590 ||||| || ||||||||| ||||| |||| | |||| || | ||||| || | |||| Sbjct 17192 AATACTGCTGCTGCTGCTGCTACAGGAGCTGTAAAAGCAACTGAGATCCAAGGGCGCATA 17133 Query 36591 CCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGTAAGCTGAGATACCAATGAGAAAG 36650 |||| | || || | |||||||| || || | || | | ||| | | |||| Sbjct 17132 CCTAAACGGTAGCTTAATTCCCATTCACGACCAATATAGCAACATACACCTAAAATAAAG 17073 Query 36651 TGGAACACAATGAGTTGATATGGTCCTCCGTTATATAACCACTCGTCGAGGGTTGCAGCT 36710 || | ||||| |||| |||||| || || ||||||| |||||| || | | ||||||| Sbjct 17072 TGAAGAACAATTAGTTCATATGGGCCACCATTATATAGCCACTCATCTAAAGATGCAGCT 17013 Query 36711 TCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTCGATGATGGGACGATTGCCCCAGAG 36770 ||||| || || || ||||||| ||| ||||| || || | || || ||||| Sbjct 17012 TCCCAAATAGGATAAAAGTGAATACCAATTGCTGCAGAACTAGGTATAATAGCACCAGAA 16953 Query 36771 ATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAGGCTCACGAATACCATCTATATCC 36830 |||||||| || ||||| ||||| | |||| || || ||||| |||||||| || || Sbjct 16952 ATGATGTTATTACCATAAAGTAAAGAACCTGCAACTGGTTCACGGATACCATCGATGTCA 16893 Query 36831 ACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTGTCACTGCTGTTAAAAGTGCAGGG 36890 || ||||| |||||||| |||||||| | ||| | | ||||||| |||| || Sbjct 16892 ACTGGAGGTGCAGCAACGAATGCAATGATGAATACAGATGTAGCTGTTAGTAGTGTTGGT 16833 Query 36891 ATCATTAGTACCCCAAACCACCCCACATAGAGGCGGTTGTTTGTACTTGTAACCCAGTCA 36950 ||||||||||| |||||||| || | ||| || ||||| | ||||| |||| ||| || Sbjct 16832 ATCATTAGTACACCAAACCAACCAATATATAGACGGTTTTCAGTACTAGTAATCCAAGCA 16773 Query 36951 CATAAACTTTCCCA 36964 || |||| |||||| Sbjct 16772 CAGAAACGTTCCCA 16759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 150452745565804