Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_016658.1 Length=47741 Score E Sequences producing significant alignments: (Bits) Value seq926 535 1e-147 seq137 535 1e-147 >seq926 Length=180086 Score = 535 bits (592), Expect = 1e-147 Identities = 737/1025 (72%), Gaps = 12/1025 (1%) Strand=Plus/Plus Query 5159 GGTGCTGTTAAAGCTACTTCACTTGACTCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGA 5218 ||||| || ||||||| ||| | | ||| |||| ||| || || || || || Sbjct 17136 GGTGCAACTAGAGCTACTGGTAATGAGTTACCAGACGCTAAATCTAGAGGAAAATTATGT 17195 Query 5219 GCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGCACGGTTCAGGACATCTGCCCAA 5278 ||||| ||||| ||||||||||||||||| | || || | ||| | | |||||||||| Sbjct 17196 GCATTACGTTCATGCATTACTTCCATACCTAAATTAGCTCTGTTTAAAATATCTGCCCAA 17255 Query 5279 GTGGGAACGATTCTACC---GCTAGAGTCAACGACTGACTGATTGAAGTTAAAGCCGTTA 5335 || || | | || |||| ||||| ||||| ||||||||||| || || || Sbjct 17256 GTATTAATTACACGGCCTTGGCTA---TCAACAACTGATTGATTGAAGTTGAAACCATTT 17312 Query 5336 AGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAACGACGGGCCAA 5395 | ||| ||||||||||| | ||| | |||| ||| || | || || ||||| Sbjct 17313 AAATTGAAAGCCATAGTACTAACAGACATTGCTGTAAACCAAATACCTACAACAGGCCAC 17372 Query 5396 GTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATGAGT 5455 || | | ||||||||||| ||| |||||||| |||||||| ||||| || | Sbjct 17373 ATACCTAAGAAGAAATGTAGCGAACGAGAGTTGTTAAAACTAGCATATTGGAAAATTAAA 17432 Query 5456 CTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTA 5515 | |||||||| |||||||| |||||||| ||||| |||||||| ||||| || || || Sbjct 17433 CGTCCAAAGTAACCATGAGCTGCAACAATATTATAAGTTTCTTCTTCTTGACCAAACTTG 17492 Query 5516 TATCCATAGTT--CTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAA 5573 || |||| ||| |||| || | |||||| |||||||| | |||||| |||| Sbjct 17493 TAACCATTGTTAGCTGATTCGTTTTC--AGTTGTCTCACGAATTAAACTAGAAGTTACAA 17550 Query 5574 GACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGT 5633 || |||||||||||| || |||| || || ||||| || || ||||| | || Sbjct 17551 GAGAACCATGCATAGCACTAAATAAAGAACCCCCAAATACACCTGCTACACCTAATTGGT 17610 Query 5634 GGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTAC 5693 |||| |||||||| || || || || || || ||||| || | |||||| || || |||| Sbjct 17611 GGAAAGGATGCATTAGAATGTTATGCTCAGCTTGGAAAACAAGCATAAAATTGAATGTAC 17670 Query 5694 CAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAA 5753 ||||||| || | ||||||||||||| ||| ||||| || || | || || || | || Sbjct 17671 CAGAGATGCCTAAAGGCATACCATCAGAGAAGCTTCCTTGACCAATTGGATAAACAAGAA 17730 Query 5754 ATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTC 5813 |||||| ||||| || || || |||| | | || || | ||||| || ||||| | Sbjct 17731 ATACTGCTGCTGCTGCTGCTACAGGAGCTGTAAAAGCAACTGAGATCCAAGGGCGCATAC 17790 Query 5814 CTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCG-ATACCAATAAGGAAG 5872 |||| | ||| || | |||||||| || || | || || | | ||| | || ||| Sbjct 17791 CTAAACGGTAGCTTAATTCCCATTCACGACCAATATA-GCAACATACACCTAAAATAAAG 17849 Query 5873 TGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCT 5932 || | || | |||| ||||| || ||||| || ||||| ||||| | | || ||| Sbjct 17850 TGAAGAACAATTAGTTCATATGGGCCACCATTATATAGCCACTCATCTAAAGATGCAGCT 17909 Query 5933 TCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGAT 5992 ||||| || ||||| ||||| | |||||||| || || |||| || || || || Sbjct 17910 TCCCAAATAGGATAAAAGTGAATACCAATTGCTGCAGAACTAGGTATAATAGCACCAGAA 17969 Query 5993 ATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCG 6052 |||||||| || ||||| |||| ||| ||||| || |||||||| || || |||||||| Sbjct 17970 ATGATGTTATTACCATAAAGTAAAGAACCTGCAACTGGTTCACGGATACCATCGATGTCA 18029 Query 6053 ACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGT 6112 ||||| |||||||| |||||||| | || ||| ||| || || |||| |||| ||| Sbjct 18030 ACTGGAGGTGCAGCAACGAATGCAATGATGAATACAGATGTAGCTGTTAGTAGTGTTGGT 18089 Query 6113 ATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCA 6172 ||||||| ||||||||||| || | ||| || ||||| | || ||||||| ||| || Sbjct 18090 ATCATTAGTACACCAAACCAACCAATATATAGACGGTTTTCAGTACTAGTAATCCAAGCA 18149 Query 6173 CAGAA 6177 ||||| Sbjct 18150 CAGAA 18154 >seq137 Length=19730 Score = 535 bits (592), Expect = 1e-147 Identities = 737/1025 (72%), Gaps = 12/1025 (1%) Strand=Plus/Minus Query 5159 GGTGCTGTTAAAGCTACTTCACTTGACTCAGCAGCTGCTAGATCAAGTGGGAAGTTGTGA 5218 ||||| || ||||||| ||| | | ||| |||| ||| || || || || || Sbjct 17786 GGTGCAACTAGAGCTACTGGTAATGAGTTACCAGACGCTAAATCTAGAGGAAAATTATGT 17727 Query 5219 GCATTTCGTTCGTGCATTACTTCCATACCAAGGTTGGCACGGTTCAGGACATCTGCCCAA 5278 ||||| ||||| ||||||||||||||||| | || || | ||| | | |||||||||| Sbjct 17726 GCATTACGTTCATGCATTACTTCCATACCTAAATTAGCTCTGTTTAAAATATCTGCCCAA 17667 Query 5279 GTGGGAACGATTCTACC---GCTAGAGTCAACGACTGACTGATTGAAGTTAAAGCCGTTA 5335 || || | | || |||| ||||| ||||| ||||||||||| || || || Sbjct 17666 GTATTAATTACACGGCCTTGGCTA---TCAACAACTGATTGATTGAAGTTGAAACCATTT 17610 Query 5336 AGATTAAAAGCCATAGTGGAGATTCCCATAGAGGTAAGCCATATGCAAACGACGGGCCAA 5395 | ||| ||||||||||| | ||| | |||| ||| || | || || ||||| Sbjct 17609 AAATTGAAAGCCATAGTACTAACAGACATTGCTGTAAACCAAATACCTACAACAGGCCAC 17550 Query 5396 GTAGCCAGGAAGAAATGTAAACTACGGCTATTGTTAAAGCTAGCATACTGGAAGATGAGT 5455 || | | ||||||||||| ||| |||||||| |||||||| ||||| || | Sbjct 17549 ATACCTAAGAAGAAATGTAGCGAACGAGAGTTGTTAAAACTAGCATATTGGAAAATTAAA 17490 Query 5456 CTCCCAAAGTAGCCATGAGCCGCAACAATGTTATACGTTTCTTCCTCTTGGCCGAATTTA 5515 | |||||||| |||||||| |||||||| ||||| |||||||| ||||| || || || Sbjct 17489 CGTCCAAAGTAACCATGAGCTGCAACAATATTATAAGTTTCTTCTTCTTGACCAAACTTG 17430 Query 5516 TATCCATAGTT--CTGAGAAGTAAGCCCAGTTGTTTCACGAATGAGCGAAGAAGTAACAA 5573 || |||| ||| |||| || | |||||| |||||||| | |||||| |||| Sbjct 17429 TAACCATTGTTAGCTGATTCGTTTTC--AGTTGTCTCACGAATTAAACTAGAAGTTACAA 17372 Query 5574 GACTTCCATGCATAGCAGCGAACAAAGCTCCACCGAATACCCCAGCAACACCGAGCATGT 5633 || |||||||||||| || |||| || || ||||| || || ||||| | || Sbjct 17371 GAGAACCATGCATAGCACTAAATAAAGAACCCCCAAATACACCTGCTACACCTAATTGGT 17312 Query 5634 GGAACGGATGCATAAGGATATTGTGTTCTGCCTGGAATACGAACATAAAGTTAAAAGTAC 5693 |||| |||||||| || || || || || || ||||| || | |||||| || || |||| Sbjct 17311 GGAAAGGATGCATTAGAATGTTATGCTCAGCTTGGAAAACAAGCATAAAATTGAATGTAC 17252 Query 5694 CAGAGATACCAAGAGGCATACCATCACTGAAACTTCCCTGTCCGAAAGGGTATACTAAAA 5753 ||||||| || | ||||||||||||| ||| ||||| || || | || || || | || Sbjct 17251 CAGAGATGCCTAAAGGCATACCATCAGAGAAGCTTCCTTGACCAATTGGATAAACAAGAA 17192 Query 5754 ATACTGAGTAGGCTGCGGCAACCGGTGCTGAATATGCTACGCAAATCCATGGTCGCATTC 5813 |||||| ||||| || || || |||| | | || || | ||||| || ||||| | Sbjct 17191 ATACTGCTGCTGCTGCTGCTACAGGAGCTGTAAAAGCAACTGAGATCCAAGGGCGCATAC 17132 Query 5814 CTAATCTGTAACTAAGTTCCCATTGGCGTCCCAAGTAAGCTGCG-ATACCAATAAGGAAG 5872 |||| | ||| || | |||||||| || || | || || | | ||| | || ||| Sbjct 17131 CTAAACGGTAGCTTAATTCCCATTCACGACCAATATA-GCAACATACACCTAAAATAAAG 17073 Query 5873 TGGAAGACGACGAGTTGGTATGGTCCTCCATTGTAAAGCCATTCATCGAGATTGGCTGCT 5932 || | || | |||| ||||| || ||||| || ||||| ||||| | | || ||| Sbjct 17072 TGAAGAACAATTAGTTCATATGGGCCACCATTATATAGCCACTCATCTAAAGATGCAGCT 17013 Query 5933 TCCCAGATGGGATAGAAGTGTAACCCAATTGCGTTGGAGCTGGGTACAACGGCTCCTGAT 5992 ||||| || ||||| ||||| | |||||||| || || |||| || || || || Sbjct 17012 TCCCAAATAGGATAAAAGTGAATACCAATTGCTGCAGAACTAGGTATAATAGCACCAGAA 16953 Query 5993 ATGATGTTGTTTCCATAGAGTAGAGATCCTGCGACGGGTTCACGTATGCCGTCGATGTCG 6052 |||||||| || ||||| |||| ||| ||||| || |||||||| || || |||||||| Sbjct 16952 ATGATGTTATTACCATAAAGTAAAGAACCTGCAACTGGTTCACGGATACCATCGATGTCA 16893 Query 6053 ACTGGGGGTGCAGCTACGAATGCTAATATAAATGCAGTAGTTGCGGTTAAGAGTGCGGGT 6112 ||||| |||||||| |||||||| | || ||| ||| || || |||| |||| ||| Sbjct 16892 ACTGGAGGTGCAGCAACGAATGCAATGATGAATACAGATGTAGCTGTTAGTAGTGTTGGT 16833 Query 6113 ATCATTAAGACACCAAACCACCCCACATAGAGGCGGTTGTTGGTGCTAGTAACCCAGTCA 6172 ||||||| ||||||||||| || | ||| || ||||| | || ||||||| ||| || Sbjct 16832 ATCATTAGTACACCAAACCAACCAATATATAGACGGTTTTCAGTACTAGTAATCCAAGCA 16773 Query 6173 CAGAA 6177 ||||| Sbjct 16772 CAGAA 16768 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 152647921426836