Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_016659.1 Length=47536 Score E Sequences producing significant alignments: (Bits) Value seq926 545 7e-151 seq137 545 7e-151 >seq926 Length=180086 Score = 545 bits (604), Expect = 7e-151 Identities = 719/997 (72%), Gaps = 0/997 (0%) Strand=Plus/Plus Query 25448 CAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 25507 |||| ||||| || ||||| || || ||||| ||||| |||||||| |||||||| |||| Sbjct 17167 CAGACGCTAAATCTAGAGGAAAATTATGTGCATTACGTTCATGCATTACTTCCATACCTA 17226 Query 25508 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 25567 | | || | ||| | ||| || |||||||| | || | || | | |||||| | Sbjct 17227 AATTAGCTCTGTTTAAAATATCTGCCCAAGTATTAATTACACGGCCTTGGCTATCAACAA 17286 Query 25568 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 25627 |||| ||||||||||| || || || | ||| ||||||||||| || ||| || | Sbjct 17287 CTGATTGATTGAAGTTGAAACCATTTAAATTGAAAGCCATAGTACTAACAGACATTGCTG 17346 Query 25628 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTAT 25687 ||| ||| || | || ||||| | | | ||||||||||| ||| || | Sbjct 17347 TAAACCAAATACCTACAACAGGCCACATACCTAAGAAGAAATGTAGCGAACGAGAGTTGT 17406 Query 25688 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 25747 |||| |||||||| ||||| || | | |||||||| |||||||| |||||||| |||| Sbjct 17407 TAAAACTAGCATATTGGAAAATTAAACGTCCAAAGTAACCATGAGCTGCAACAATATTAT 17466 Query 25748 ACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTT 25807 | || ||||||||||| || || || || |||| ||| ||||| ||||||| | Sbjct 17467 AAGTTTCTTCTTCTTGACCAAACTTGTAACCATTGTTAGCTGATTCGTTTTCAGTTGTCT 17526 Query 25808 CACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 25867 ||||||| | ||||| |||||| || ||||||||| ||||||| || || | Sbjct 17527 CACGAATTAAACTAGAAGTTACAAGAGAACCATGCATAGCACTAAATAAAGAACCCCCAA 17586 Query 25868 ATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAA 25927 |||| ||||| ||||| | ||||| |||||||| || || || || || || || | Sbjct 17587 ATACACCTGCTACACCTAATTGGTGGAAAGGATGCATTAGAATGTTATGCTCAGCTTGGA 17646 Query 25928 AGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCC 25987 | |||| |||||||||||| || || || || || | |||||||||||||||||| || | Sbjct 17647 AAACAAGCATAAAATTGAATGTACCAGAGATGCCTAAAGGCATACCATCAGAGAAGCTTC 17706 Query 25988 CTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAG 26047 |||| |||| || || || | ||||| || ||||||||| ||||| |||| | ||| Sbjct 17707 CTTGACCAATTGGATAAACAAGAAATACTGCTGCTGCTGCTGCTACAGGAGCTGTAAAAG 17766 Query 26048 CTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGT 26107 | || | ||||| || | ||| |||| | || || | |||||||| || || | | Sbjct 17767 CAACTGAGATCCAAGGGCGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCAATAT 17826 Query 26108 AAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACA 26167 | | | || | | |||||| | ||||| |||| |||||| ||||| ||||| | Sbjct 17827 AGCAACATACACCTAAAATAAAGTGAAGAACAATTAGTTCATATGGGCCACCATTATATA 17886 Query 26168 ACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAG 26227 |||||| || | | |||||||||||| || || || ||||||| ||| ||||| || Sbjct 17887 GCCACTCATCTAAAGATGCAGCTTCCCAAATAGGATAAAAGTGAATACCAATTGCTGCAG 17946 Query 26228 ATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAG 26287 | || | || || || || |||||||| || ||||| ||||| | |||| || | Sbjct 17947 AACTAGGTATAATAGCACCAGAAATGATGTTATTACCATAAAGTAAAGAACCTGCAACTG 18006 Query 26288 GCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTG 26347 | ||||| |||||||| || || || ||||| |||||||| |||||||| | ||| | | Sbjct 18007 GTTCACGGATACCATCGATGTCAACTGGAGGTGCAGCAACGAATGCAATGATGAATACAG 18066 Query 26348 TCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGT 26407 ||||||| |||| || ||||||||||| |||||||| || | ||| || |||| Sbjct 18067 ATGTAGCTGTTAGTAGTGTTGGTATCATTAGTACACCAAACCAACCAATATATAGACGGT 18126 Query 26408 TGTTTGTACTTGTAACCCAGTCACATAAACTTTCCCA 26444 | | ||||| |||| ||| |||| |||| |||||| Sbjct 18127 TTTCAGTACTAGTAATCCAAGCACAGAAACGTTCCCA 18163 >seq137 Length=19730 Score = 545 bits (604), Expect = 7e-151 Identities = 719/997 (72%), Gaps = 0/997 (0%) Strand=Plus/Minus Query 25448 CAGATGCTAAGTCAAGAGGGAAGTTGTGTGCGTTACGCTCATGCATAACTTCCATGCCTA 25507 |||| ||||| || ||||| || || ||||| ||||| |||||||| |||||||| |||| Sbjct 17755 CAGACGCTAAATCTAGAGGAAAATTATGTGCATTACGTTCATGCATTACTTCCATACCTA 17696 Query 25508 AGTCGGCACGGTTAAGAATGTCAGCCCAAGTTGGGACGACTCTTCCGTTGGAATCAACGA 25567 | | || | ||| | ||| || |||||||| | || | || | | |||||| | Sbjct 17695 AATTAGCTCTGTTTAAAATATCTGCCCAAGTATTAATTACACGGCCTTGGCTATCAACAA 17636 Query 25568 CTGACTGATTGAAGTTAAAGCCGTTGAGATTAAAAGCCATAGTGGAGACTCCCATAGCGG 25627 |||| ||||||||||| || || || | ||| ||||||||||| || ||| || | Sbjct 17635 CTGATTGATTGAAGTTGAAACCATTTAAATTGAAAGCCATAGTACTAACAGACATTGCTG 17576 Query 25628 TAAGCCATATGCAAGTGACGGGCCAAGCAGCCAGGAAGAAATGTAAACTACGGCTATTAT 25687 ||| ||| || | || ||||| | | | ||||||||||| ||| || | Sbjct 17575 TAAACCAAATACCTACAACAGGCCACATACCTAAGAAGAAATGTAGCGAACGAGAGTTGT 17516 Query 25688 TAAAGCTAGCATACTGGAAGATGAGTCTCCCAAAGTAGCCATGAGCCGCAACAATGTTAT 25747 |||| |||||||| ||||| || | | |||||||| |||||||| |||||||| |||| Sbjct 17515 TAAAACTAGCATATTGGAAAATTAAACGTCCAAAGTAACCATGAGCTGCAACAATATTAT 17456 Query 25748 ACGTCTCTTCTTCTTGGCCGAATTTATATCCATAGTTCTGAGATTCAAGCCCAGTTGTTT 25807 | || ||||||||||| || || || || |||| ||| ||||| ||||||| | Sbjct 17455 AAGTTTCTTCTTCTTGACCAAACTTGTAACCATTGTTAGCTGATTCGTTTTCAGTTGTCT 17396 Query 25808 CACGAATAAGTGAGGAAGTAACAAGACTTCCGTGCATAGCAGCGAATAAAGCTCCACCGA 25867 ||||||| | ||||| |||||| || ||||||||| ||||||| || || | Sbjct 17395 CACGAATTAAACTAGAAGTTACAAGAGAACCATGCATAGCACTAAATAAAGAACCCCCAA 17336 Query 25868 ATACCCCTGCAACACCGAGCATATGGAACGGATGCATAAGGATATTGTGTTCTGCCTGAA 25927 |||| ||||| ||||| | ||||| |||||||| || || || || || || || | Sbjct 17335 ATACACCTGCTACACCTAATTGGTGGAAAGGATGCATTAGAATGTTATGCTCAGCTTGGA 17276 Query 25928 AGACAAACATAAAATTGAAAGTCCCTGAAATACCAAGAGGCATACCATCAGAGAAACTCC 25987 | |||| |||||||||||| || || || || || | |||||||||||||||||| || | Sbjct 17275 AAACAAGCATAAAATTGAATGTACCAGAGATGCCTAAAGGCATACCATCAGAGAAGCTTC 17216 Query 25988 CTTGTCCAAAAGGGTAGACTAAGAATACAGCAAATGCTGCTGCAACAGGGGCTGAATAAG 26047 |||| |||| || || || | ||||| || ||||||||| ||||| |||| | ||| Sbjct 17215 CTTGACCAATTGGATAAACAAGAAATACTGCTGCTGCTGCTGCTACAGGAGCTGTAAAAG 17156 Query 26048 CTACACATATCCACGGCCTCATGCCTAGTCTATAACTAAGTTCCCATTGTCGTCCCAAGT 26107 | || | ||||| || | ||| |||| | || || | |||||||| || || | | Sbjct 17155 CAACTGAGATCCAAGGGCGCATACCTAAACGGTAGCTTAATTCCCATTCACGACCAATAT 17096 Query 26108 AAGCTGAGATGCCGATGAGAAAGTGGAACACAATAAGTTGATATGGTCCACCGTTATACA 26167 | | | || | | |||||| | ||||| |||| |||||| ||||| ||||| | Sbjct 17095 AGCAACATACACCTAAAATAAAGTGAAGAACAATTAGTTCATATGGGCCACCATTATATA 17036 Query 26168 ACCACTCGTCGAGGGTTGCAGCTTCCCAGATTGGGTAGAAGTGAAGACCGATTGCGTTAG 26227 |||||| || | | |||||||||||| || || || ||||||| ||| ||||| || Sbjct 17035 GCCACTCATCTAAAGATGCAGCTTCCCAAATAGGATAAAAGTGAATACCAATTGCTGCAG 16976 Query 26228 ATGACGGGACGATTGCCCCTGAGATGATGTTGTTTCCATAGAGTAATGCTCCTGAGACAG 26287 | || | || || || || |||||||| || ||||| ||||| | |||| || | Sbjct 16975 AACTAGGTATAATAGCACCAGAAATGATGTTATTACCATAAAGTAAAGAACCTGCAACTG 16916 Query 26288 GCTCACGAATACCATCTATATCCACGGGAGGCGCAGCAACAAATGCAATTAAAAATGCTG 26347 | ||||| |||||||| || || || ||||| |||||||| |||||||| | ||| | | Sbjct 16915 GTTCACGGATACCATCGATGTCAACTGGAGGTGCAGCAACGAATGCAATGATGAATACAG 16856 Query 26348 TCACTGCTGTTAAAAGTGCAGGGATCATTAGTACCCCAAACCACCCCACATAGAGGCGGT 26407 ||||||| |||| || ||||||||||| |||||||| || | ||| || |||| Sbjct 16855 ATGTAGCTGTTAGTAGTGTTGGTATCATTAGTACACCAAACCAACCAATATATAGACGGT 16796 Query 26408 TGTTTGTACTTGTAACCCAGTCACATAAACTTTCCCA 26444 | | ||||| |||| ||| |||| |||| |||||| Sbjct 16795 TTTCAGTACTAGTAATCCAAGCACAGAAACGTTCCCA 16759 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 151991928640376