Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chondrus_20crispus_20[genbank_20GCA_5F000350225.2_202013-05-22] 926 sequences; 104,980,420 total letters Query= NC_018874.1 Length=211518 Score E Sequences producing significant alignments: (Bits) Value seq859 91.5 2e-13 >seq859 Length=830468 Score = 91.5 bits (100), Expect = 2e-13 Identities = 476/734 (65%), Gaps = 43/734 (6%) Strand=Plus/Plus Query 197037 AAAGCCCGTACCGATCTTACAAATGGATTCGTACATCTGGT-TGTCGGGATTGTAACAGG 197095 |||||| || ||||||||||| || || | ||| ||| | |||| || | ||| || | Sbjct 777083 AAAGCCGGTGCCGATCTTACAGATTGACTGATAC-TCTTCTGTGTCAGGGTCGTAGCACG 777141 Query 197096 CGAGTAAGAAAGCGCCGTAGGTTCCCGTTCTCTTTCCCACCCCGTTGA-AGCCTCCGATA 197154 | |||| ||| || ||||| | || | ||| |||||| | | || ||||||| || Sbjct 777142 CCAGTAGGAACGCTCCGTATATACCTGCTCT-TTTCCCGCGGCCAAGATAGCCTCCAATC 777200 Query 197155 ACCACCAGATCCAGAGTGTCGCACACCCCTTCCATGTAATCTTTCTTCAGTTTGAGCCAG 197214 ||||| |||||||| || | ||||| | |||||| ||||| | |||||||| Sbjct 777201 GGCACCAAATCCAGAGAATCCCCGCAGCCTTCAAGGTAATCCTTCTTAACCTTGAGCCA- 777259 Query 197215 CTTCTAGAT-CTCTTGGCAATCTCGTAGGTTGCGTT---TACGTCCAGGGTCTTGATCAT 197270 || | | | | ||| | ||||||||| | ||| ||||||| | ||| | ||| Sbjct 777260 ATTTTGGCTGCGATTGTTAGGCTCGTAGGTAGAGTTGTCACCGTCCAGCGCCTTCACCAT 777319 Query 197271 CAATCCCTCGCAATCTTCCTTCACGGCCTTGTTCATGAAAGTT--TGAATGTCTTCCGGT 197328 | |||||||| ||||||| | | | |||| ||| | | || ||||| || || Sbjct 777320 GAGACCCTCGCATCCTTCCTTGATGCTTCTATTCA-GAAGGCTCATG-ATGTCCTCTGGA 777377 Query 197329 TTGTTAGACATCATATCTC-GCGCGAAGATAAATTGTCCCTCCACCTCCGTAAAACAACT 197387 | | || ||| | || | || || | ||| || || || ||| |||| | | Sbjct 777378 TCTCTCGA-ATCTTCTCCCTTTGCAAACAAAAACTGCCCTTCTTGTTCCTGGAAACCATT 777436 Query 197388 CCTCATAAGTTCCCTCCTCTCTCTGAAGCTCTTG-TTGACC--TGAGAC--ACTCCGTTC 197442 | |||| ||| ||| ||| ||| | | | || || | |||| |||| || Sbjct 777437 --TAATAACTTCTCTCTTCT---TGACGTTAAGGATTCTCCAATAAGACTTTCTCCATTA 777491 Query 197443 ATGTACAACACGTCAAAAGCAAAGACGCACACCTGGACGGTTATCTCTTCTTCCTTGACA 197502 | | ||| || |||||| ||||| | ||| |||| || || | || | | | || Sbjct 777492 AAGAACAGCAAGTCAAACGCAAAAATGCATACCTTCACAGTGACTTCATGGGCTTCAACG 777551 Query 197503 TCTTTACGTTTTCTGGTCGCCAGCTTTTGAAAGGGAAGGATCTGCTTCTTCTCAACGTCC 197562 || || | |||||| || | || || ||||| ||||||||||||| || || Sbjct 777552 TCCTTCCTCTTTCTGCCTTGCAATTCCTGGAATGGAAGAATCTGCTTCTTCTGCACATCA 777611 Query 197563 CAAGCAACTGCCTCAGCGTCCAAGATGAAAGACTTCACTCCCTCGT--------TG-ATC 197613 | || ||||| || ||||| | |||||||| | |||| || || | Sbjct 777612 TACGCCACTGCTTCTGCGTCAATAATGAAAGA---TGCCCCCTTGTATTCAGTATGCAGT 777668 Query 197614 GATTGGGGAAGCCTATTGATTATGTCGGGGTACTTCTCGGTGTT--ATTTTCAGAGTTGC 197671 | || ||||| |||| | || || || |||| | || ||| ||| || | || | Sbjct 777669 GCTTTTGGAAGGCTATCCACTAAATCTGGATACT--TTGGAGTTAAATTCTCTGCATTTC 777726 Query 197672 GGCTAAAAATTCTAAT-CTTCCCTCCCTCCATGTAGTGAATCTGAGCCCTCTCTCCGTCA 197730 | || | |||| || ||||| | | |||| | || | || || |||||||||||| Sbjct 777727 GACTGTATATTCGGATGCTTCCAT-CTTCCAGGCGATGGACTTGCGCTCTCTCTCCGTCA 777785 Query 197731 TACTTGTACTCGCA 197744 |||||| |||| || Sbjct 777786 TACTTGAACTCACA 777799 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 676721766854880